SMTL ID : 8j57.1

Cryo-EM structure of Mycobacterium tuberculosis ATP synthase Fo in complex with bedaquiline(BDQ)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-9-1-mer

Ligands

7 x BQ1: Bedaquiline(Non-covalent)

BQ1.1: 10 residues within 4Å: Chain A: E.61, A.62, Y.64, F.65, L.68 Chain B: A.63, I.66 Chain J: P.170, I.171, V.174 10 PLIP interactions: 1 interactions with chain B, 5 interactions with chain A, 4 interactions with chain J Hydrophobic interactions: B:I.66, A:E.61, A:F.65, A:F.65, A:L.68, J:P.170, J:I.171, J:I.171, J:V.174 Salt bridges: A:E.61 BQ1.2: 9 residues within 4Å: Chain D: E.61, Y.64, F.65 Chain E: A.62, A.63, I.66 Chain J: I.215, W.216, F.219 8 PLIP interactions: 4 interactions with chain J, 3 interactions with chain D, 1 interactions with chain E Hydrophobic interactions: J:I.215, J:I.215, J:F.219, J:F.219, D:E.61, D:F.65, E:I.66 Salt bridges: D:E.61 BQ1.3: 9 residues within 4Å: Chain E: G.58, E.61, A.62, Y.64, F.65 Chain F: L.59, A.62, A.63, I.66 6 PLIP interactions: 1 interactions with chain F, 5 interactions with chain E Hydrophobic interactions: F:I.66, E:E.61, E:F.65, E:F.65, E:F.65 Salt bridges: E:E.61 BQ1.4: 8 residues within 4Å: Chain F: G.58, E.61, A.62, F.65 Chain G: L.59, A.62, A.63, I.66 8 PLIP interactions: 7 interactions with chain F, 1 interactions with chain G Hydrophobic interactions: F:E.61, F:F.65, F:F.65, F:F.65, G:I.66 Hydrogen bonds: F:E.61, F:E.61 Salt bridges: F:E.61 BQ1.5: 9 residues within 4Å: Chain G: G.58, E.61, A.62, Y.64, F.65, L.68 Chain H: A.62, A.63, I.66 7 PLIP interactions: 6 interactions with chain G, 1 interactions with chain H Hydrophobic interactions: G:E.61, G:A.62, G:F.65, G:F.65, G:L.68, H:I.66 Salt bridges: G:E.61 BQ1.6: 9 residues within 4Å: Chain H: E.61, A.62, Y.64, F.65, L.68 Chain I: L.59, A.62, A.63, I.66 6 PLIP interactions: 5 interactions with chain H, 1 interactions with chain I Hydrophobic interactions: H:E.61, H:F.65, H:F.65, H:L.68, I:I.66 Salt bridges: H:E.61 BQ1.7: 8 residues within 4Å: Chain A: A.62, A.63, I.66 Chain I: E.61, A.62, Y.64, F.65, L.68 5 PLIP interactions: 1 interactions with chain A, 4 interactions with chain I Hydrophobic interactions: A:I.66, I:F.65, I:F.65, I:L.68 Salt bridges: I:E.61

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, Y. et al., Inhibition of M. tuberculosis and human ATP synthase by BDQ and TBAJ-587. Nature (2024)

Release Date

2024-05-01

Peptides

ATP synthase subunit c: ABCDEFGHI
ATP synthase subunit a: J

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
1

B
2

C
3

D
4

E
5

F
6

G
7

H
8

I
9

J
a

Membrane

We predict this structure to be a membrane protein.
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ATP synthase subunit c

ATP synthase subunit a

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