SMTL ID : 8j5u.1

Crystal structure of Mycobacterium tuberculosis OppA complexed with an endogenous oligopeptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.98 Å

Oligo State

monomer

Ligands

1 x ALA- SER- PRO- PHE- SER- PRO- ASP- PRO- PRO: Endogenous oligopeptide(Non-covalent)

ALA-SER-PRO-PHE-SER-PRO-ASP-PRO-PRO.1: 23 residues within 4Å: Chain A: N.110, N.111, A.112, S.193, N.230, D.297, S.338, W.339, Y.340, Y.441, S.445, T.446, F.475, F.489, G.490, W.491, V.492, G.493, S.500, Q.503, I.504, S.560, P.561 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:N.110, A:A.112, A:Y.340, A:Y.441, A:F.475, A:F.475, A:F.475, A:F.489, A:W.491, A:I.504 Hydrogen bonds: A:N.110, A:N.110, A:A.112, A:S.193, A:S.193, A:Y.340, A:G.490, A:G.490, A:V.492, A:V.492, A:Q.503 Water bridges: A:E.113

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, X. et al., An oligopeptide permease, OppABCD, requires an iron-sulfur cluster domain for functionality. Nat.Struct.Mol.Biol. (2024)

Release Date

2024-04-03

Peptides

Uncharacterized protein Rv1280c: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Uncharacterized protein Rv1280c