- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x TVJ: [6-methyl-4-[(~{E})-(oxamoylhydrazinylidene)methyl]-5-oxidanyl-pyridin-3-yl]methyl dihydrogen phosphate(Non-covalent)
- 5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.2: 8 residues within 4Å:- Chain A: D.104, E.105, V.106, N.111, H.349, V.352, L.360, I.362
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:V.106, A:N.111, A:H.349
EDO.3: 9 residues within 4Å:- Chain A: T.204, S.211, S.333, L.334, G.335, G.336, E.338, L.340
- Chain B: T.38
7 PLIP interactions:6 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:T.204, A:S.333, A:G.336, A:E.338, B:T.38
- Water bridges: A:S.211, A:S.211
EDO.4: 6 residues within 4Å:- Chain A: W.25, S.26, P.33
- Chain C: W.25, S.26, P.33
4 PLIP interactions:2 interactions with chain A, 2 interactions with chain C- Hydrogen bonds: A:S.26, A:S.26, C:S.26
- Water bridges: C:S.27
EDO.5: 9 residues within 4Å:- Chain A: S.35, L.36, A.37, T.38, S.54, P.242
- Chain B: D.212, V.213, V.214
4 PLIP interactions:2 interactions with chain B, 2 interactions with chain A- Water bridges: B:V.214, B:D.244
- Hydrogen bonds: A:A.37, A:S.54
EDO.8: 9 residues within 4Å:- Chain B: N.181, T.182, S.185, C.201, S.202, A.203, K.205, Y.206, M.207
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:S.185, B:S.202, B:K.205, B:M.207
- Water bridges: B:N.181
- 3 x GOL: GLYCEROL(Non-functional Binders)
GOL.7: 7 residues within 4Å:- Chain A: R.116, V.117, E.120, F.121
- Chain B: H.92, L.93, L.94
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:L.93
- Water bridges: B:R.228, B:R.228
GOL.10: 8 residues within 4Å:- Chain C: H.92, L.93, L.94, L.232
- Chain D: R.116, V.117, E.120, F.121
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:L.93
- Water bridges: C:R.228, C:R.228
GOL.12: 7 residues within 4Å:- Chain C: V.117, E.120, F.121
- Chain D: H.92, L.93, L.94, L.232
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:H.92
- Water bridges: D:R.228, D:R.228
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Echizen, H. et al., Discovery of a cystathionine gamma-lyase (CSE) selective inhibitor targeting active-site pyridoxal 5'-phosphate (PLP) via Schiff base formation. Sci Rep (2023)
- Release Date
- 2024-02-14
- Peptides
- Cystathionine gamma-lyase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
JB
KC
ID
L
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x TVJ: [6-methyl-4-[(~{E})-(oxamoylhydrazinylidene)methyl]-5-oxidanyl-pyridin-3-yl]methyl dihydrogen phosphate(Non-covalent)
- 5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 3 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Echizen, H. et al., Discovery of a cystathionine gamma-lyase (CSE) selective inhibitor targeting active-site pyridoxal 5'-phosphate (PLP) via Schiff base formation. Sci Rep (2023)
- Release Date
- 2024-02-14
- Peptides
- Cystathionine gamma-lyase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
JB
KC
ID
L