SMTL ID : 8j6o.1

transport T2

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-dimer

Ligands

4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain A: D.304, E.306, N.326, I.399 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 2 residues within 4Å: Chain A: N.437, Q.549 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 4 residues within 4Å: Chain B: D.304, E.306, N.326, I.399 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 2 residues within 4Å: Chain B: N.437, Q.549 No protein-ligand interaction detected (PLIP)

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.5: 1 residues within 4Å: Chain A: N.395 No protein-ligand interaction detected (PLIP) NAG.6: 3 residues within 4Å: Chain A: N.299, S.301, L.319 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.301, A:S.301 NAG.8: 1 residues within 4Å: Chain B: N.395 No protein-ligand interaction detected (PLIP) NAG.9: 3 residues within 4Å: Chain B: N.299, S.301, L.319 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.301, B:S.301

2 x ZN: ZINC ION(Non-covalent)

ZN.7: 6 residues within 4Å: Chain A: S.836, H.840, D.851, H.1068, W.1071, H.1072 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.840, A:D.851, A:H.1068, A:H.1072 ZN.10: 5 residues within 4Å: Chain B: S.836, H.840, D.851, H.1068, H.1072 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.840, B:D.851, B:H.1068, B:H.1072

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, J. et al., Structural insights into double-stranded RNA recognition and transport by SID-1. Nat.Struct.Mol.Biol. (2024)

Release Date

2024-05-01

Peptides

Green fluorescent protein (Fragment),SID1 transmembrane family member 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Membrane

We predict this structure to be a membrane protein.
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Green fluorescent protein (Fragment),SID1 transmembrane family member 2