SMTL ID : 8j6x.1

Crystal structure of SARS-CoV2 N-NTD complexed with 5-Benzyloxygramine derivative (P3-8)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-tetramer

Ligands

1 x U2H: ~{N}-methyl-~{N}-[(5-phenylmethoxy-1~{H}-indol-3-yl)methyl]propan-1-amine(Non-covalent)

U2H.1: 8 residues within 4Å: Chain A: N.29, N.131 Chain B: R.49, G.105 Chain D: W.33, N.56, N.58, I.127 5 PLIP interactions: 3 interactions with chain D, 2 interactions with chain A Hydrophobic interactions: D:I.127, A:N.29 pi-Stacking: D:W.33, D:W.33 Hydrogen bonds: A:N.29

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hong, J.Y. et al., Targeting protein-protein interaction interfaces with antiviral N protein inhibitor in SARS-CoV-2. Biophys.J. (2024)

Release Date

2024-02-07

Peptides

Nucleoprotein: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Nucleoprotein

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