SMTL ID : 8j8k.1

Membrane bound PRTase, C3 symmetry, acceptor bound

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-trimer

Ligands

3 x DSL: MONO-TRANS, OCTA-CIS DECAPRENYL-PHOSPHATE(Non-covalent)

DSL.1: 10 residues within 4Å: Chain A: K.28, Y.157, M.180, G.183, M.187, K.191, A.258, I.259, Y.262, P.274 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:Y.157, A:M.187, A:I.259, A:Y.262, A:P.274 Hydrogen bonds: A:Y.157, A:Y.157 Salt bridges: A:K.28, A:K.191 DSL.2: 10 residues within 4Å: Chain B: K.28, Y.157, M.180, G.183, M.187, K.191, A.258, I.259, Y.262, P.274 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:Y.157, B:M.187, B:I.259, B:Y.262, B:P.274 Hydrogen bonds: B:Y.157, B:Y.157 Salt bridges: B:K.28, B:K.191 DSL.3: 10 residues within 4Å: Chain C: K.28, Y.157, M.180, G.183, M.187, K.191, A.258, I.259, Y.262, P.274 9 PLIP interactions: 9 interactions with chain C Hydrophobic interactions: C:Y.157, C:M.187, C:I.259, C:Y.262, C:P.274 Hydrogen bonds: C:Y.157, C:Y.157 Salt bridges: C:K.28, C:K.191

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gao, S. et al., Structural analysis of phosphoribosyltransferase-mediated cell wall precursor synthesis in Mycobacterium tuberculosis. Nat Microbiol (2024)

Release Date

2024-02-07

Peptides

Decaprenyl-phosphate phosphoribosyltransferase: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Membrane

We predict this structure to be a membrane protein.
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Decaprenyl-phosphate phosphoribosyltransferase