SMTL ID : 8j9l.1

Crystal Structure of Human H-Ferritin variant 123F assembling in solution2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-24-mer

Ligands

32 x FE: FE (III) ION(Non-covalent)

FE.1: 5 residues within 4Å: Chain A: H.174 Chain E: H.174 Chain F: H.174 Chain J: H.174 Ligands: FE.8 No protein-ligand interaction detected (PLIP) FE.2: 4 residues within 4Å: Chain A: E.28, E.63, H.66, Q.142 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:E.28, A:E.63, A:H.66 FE.3: 5 residues within 4Å: Chain B: H.174 Chain D: H.174 Chain M: L.170, H.174 Chain T: H.174 No protein-ligand interaction detected (PLIP) FE.4: 5 residues within 4Å: Chain B: E.28, E.63, H.66, V.111, Q.142 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:E.28, B:E.63, B:E.63, B:H.66 FE.5: 4 residues within 4Å: Chain C: E.28, E.63, H.66, Q.142 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:E.28, C:E.63, C:H.66 FE.6: 4 residues within 4Å: Chain D: E.28, E.63, H.66, Q.142 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:E.28, D:E.63, D:H.66 FE.7: 5 residues within 4Å: Chain E: E.28, E.63, H.66, V.111, Q.142 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:E.28, E:E.63, E:E.63, E:H.66 FE.8: 5 residues within 4Å: Chain A: H.174 Chain E: H.174 Chain F: H.174 Chain J: H.174 Ligands: FE.1 No protein-ligand interaction detected (PLIP) FE.9: 4 residues within 4Å: Chain F: E.28, E.63, H.66, Q.142 3 PLIP interactions: 3 interactions with chain F Metal complexes: F:E.28, F:E.63, F:H.66 FE.10: 5 residues within 4Å: Chain G: H.174 Chain I: H.174 Chain Q: L.170, H.174 Chain W: H.174 No protein-ligand interaction detected (PLIP) FE.11: 5 residues within 4Å: Chain G: E.28, E.63, H.66, V.111, Q.142 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:E.28, G:E.63, G:E.63, G:H.66 FE.12: 4 residues within 4Å: Chain H: E.28, E.63, H.66, Q.142 3 PLIP interactions: 3 interactions with chain H Metal complexes: H:E.28, H:E.63, H:H.66 FE.13: 4 residues within 4Å: Chain I: E.28, E.63, H.66, Q.142 3 PLIP interactions: 3 interactions with chain I Metal complexes: I:E.28, I:E.63, I:H.66 FE.14: 5 residues within 4Å: Chain J: E.28, E.63, H.66, V.111, Q.142 4 PLIP interactions: 4 interactions with chain J Metal complexes: J:E.28, J:E.63, J:E.63, J:H.66 FE.15: 4 residues within 4Å: Chain K: E.28, E.63, H.66, Q.142 4 PLIP interactions: 4 interactions with chain K Metal complexes: K:E.28, K:E.28, K:E.63, K:H.66 FE.16: 7 residues within 4Å: Chain K: H.174 Chain N: L.170, H.174 Chain O: H.174 Chain R: L.170, H.174 Ligands: FE.22 No protein-ligand interaction detected (PLIP) FE.17: 4 residues within 4Å: Chain L: E.28, E.63, H.66, Q.142 3 PLIP interactions: 3 interactions with chain L Metal complexes: L:E.28, L:E.63, L:H.66 FE.18: 8 residues within 4Å: Chain C: L.170, H.174 Chain L: L.170, H.174 Chain V: L.170, H.174 Chain X: L.170, H.174 1 PLIP interactions: 1 interactions with chain L Metal complexes: L:H.174 FE.19: 4 residues within 4Å: Chain M: E.28, E.63, H.66, Q.142 3 PLIP interactions: 3 interactions with chain M Metal complexes: M:E.28, M:E.63, M:H.66 FE.20: 4 residues within 4Å: Chain N: E.28, E.63, H.66, Q.142 3 PLIP interactions: 3 interactions with chain N Metal complexes: N:E.28, N:E.63, N:H.66 FE.21: 4 residues within 4Å: Chain O: E.28, E.63, H.66, Q.142 4 PLIP interactions: 4 interactions with chain O Metal complexes: O:E.28, O:E.28, O:E.63, O:H.66 FE.22: 7 residues within 4Å: Chain K: H.174 Chain N: L.170, H.174 Chain O: H.174 Chain R: L.170, H.174 Ligands: FE.16 No protein-ligand interaction detected (PLIP) FE.23: 4 residues within 4Å: Chain P: E.28, E.63, H.66, Q.142 3 PLIP interactions: 3 interactions with chain P Metal complexes: P:E.28, P:E.63, P:H.66 FE.24: 8 residues within 4Å: Chain H: L.170, H.174 Chain P: L.170, H.174 Chain S: L.170, H.174 Chain U: L.170, H.174 1 PLIP interactions: 1 interactions with chain P Metal complexes: P:H.174 FE.25: 4 residues within 4Å: Chain Q: E.28, E.63, H.66, Q.142 3 PLIP interactions: 3 interactions with chain Q Metal complexes: Q:E.28, Q:E.63, Q:H.66 FE.26: 4 residues within 4Å: Chain R: E.28, E.63, H.66, Q.142 3 PLIP interactions: 3 interactions with chain R Metal complexes: R:E.28, R:E.63, R:H.66 FE.27: 4 residues within 4Å: Chain S: E.28, E.63, H.66, Q.142 3 PLIP interactions: 3 interactions with chain S Metal complexes: S:E.28, S:E.63, S:H.66 FE.28: 4 residues within 4Å: Chain T: E.28, E.63, H.66, Q.142 3 PLIP interactions: 3 interactions with chain T Metal complexes: T:E.28, T:E.63, T:H.66 FE.29: 4 residues within 4Å: Chain U: E.28, E.63, H.66, Q.142 3 PLIP interactions: 3 interactions with chain U Metal complexes: U:E.28, U:E.63, U:H.66 FE.30: 4 residues within 4Å: Chain V: E.28, E.63, H.66, Q.142 3 PLIP interactions: 3 interactions with chain V Metal complexes: V:E.28, V:E.63, V:H.66 FE.31: 4 residues within 4Å: Chain W: E.28, E.63, H.66, Q.142 3 PLIP interactions: 3 interactions with chain W Metal complexes: W:E.28, W:E.63, W:H.66 FE.32: 4 residues within 4Å: Chain X: E.28, E.63, H.66, Q.142 3 PLIP interactions: 3 interactions with chain X Metal complexes: X:E.28, X:E.63, X:H.66

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, X. et al., Shape-Anisotropic Assembly of Protein Nanocages with Identical Building Blocks by Designed Intermolecular pi-pi Interactions. Adv Sci (2023)

Release Date

2024-01-31

Peptides

Ferritin heavy chain: ABCDEFGHIJKLMNOPQRSTUVWX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

C
G

D
I

E
K

F
B

G
C

H
G

I
I

J
K

K
D

L
H

M
J

N
L

O
D

P
H

Q
J

R
L

S
A

T
E

U
F

V
A

W
E

X
F

Ferritin heavy chain

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