SMTL ID : 8j9x.1

Cryo-EM structure of the African swine fever virus topoisomerase 2 complexed with Cut02aDNA and m-AMSA (EDI-3)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: D.539, D.541 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.541 MG.2: 2 residues within 4Å: Chain B: D.539, D.541 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:D.539, B:D.541

2 x ASW: N-[4-(acridin-9-ylamino)-3-methoxyphenyl]methanesulfonamide(Non-covalent)

ASW.3: 9 residues within 4Å: Chain A: D.416, G.471, V.473, K.503, V.504 Chain C: C.13 Chain E: C.4, G.5 Chain F: G.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.471 ASW.4: 8 residues within 4Å: Chain B: G.471, V.473, K.503, V.504 Chain D: C.13 Chain E: G.1 Chain F: C.4, G.5 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:G.471

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chang, C.M. et al., A unified view on enzyme catalysis by cryo-EM study of a DNA topoisomerase. Commun Chem (2024)

Release Date

2024-02-07

Peptides

DNA topoisomerase 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

DNA topoisomerase 2

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