SMTL ID : 8ja5.1 (1 other biounit)

Crystal structure of Nipah Virus attachment (G) glycoprotein in complex with neutralizing antibody 14F8

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.79 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN.1: 5 residues within 4Å: Chain C: L.285, N.293, W.294, R.295, N.296 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- BMA- MAN- MAN- FUC: alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN-FUC.2: 4 residues within 4Å: Chain C: R.310, F.311, N.312, N.344 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.3: 3 residues within 4Å: Chain C: V.115, N.121, Y.124 No protein-ligand interaction detected (PLIP)

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 6 residues within 4Å: Chain C: T.176, Y.178, K.230, N.232, S.234, D.235 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:T.176, C:T.176, C:K.230, C:N.232

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, Y.H. et al., Crystal structure of Nipah Virus attachment (G) glycoprotein in complex with neutralizing antibody 14F8. To Be Published

Release Date

2024-05-08

Peptides

14F8 antibody heavy chain: A
14F8 antibody light chain: B
Glycoprotein G: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

C
A

14F8 antibody heavy chain

14F8 antibody light chain

Glycoprotein G

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