SMTL ID : 8jai.1

Crystal Structure of Human H-Ferritin variant 123F assembling in solution 1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.56 Å

Oligo State

homo-24-mer

Ligands

18 x FE: FE (III) ION(Non-covalent)

FE.1: 4 residues within 4Å: Chain A: E.28, E.63, H.66, Q.142 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.28, A:H.66 FE.2: 4 residues within 4Å: Chain B: E.28, E.63, H.66, Q.142 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:E.28, B:H.66 FE.3: 4 residues within 4Å: Chain B: Y.35, Q.59, E.63, E.108 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:E.63, B:E.108 FE.4: 4 residues within 4Å: Chain D: H.66, Y.138, E.141, Q.142 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:E.141 FE.5: 5 residues within 4Å: Chain E: Y.35, Q.59, E.63, E.108 Ligands: FE.6 2 PLIP interactions: 2 interactions with chain E Metal complexes: E:E.63, E:E.108 FE.6: 5 residues within 4Å: Chain E: E.63, H.66, E.108, Q.142 Ligands: FE.5 3 PLIP interactions: 3 interactions with chain E Metal complexes: E:E.63, E:E.63, E:E.108 FE.7: 3 residues within 4Å: Chain F: E.28, E.63, H.66 2 PLIP interactions: 2 interactions with chain F Metal complexes: F:E.28, F:H.66 FE.8: 3 residues within 4Å: Chain G: E.63, H.66, Q.142 2 PLIP interactions: 2 interactions with chain G Metal complexes: G:E.63, G:H.66 FE.9: 4 residues within 4Å: Chain H: E.28, E.63, H.66, Q.142 1 PLIP interactions: 1 interactions with chain H Metal complexes: H:E.63 FE.10: 6 residues within 4Å: Chain I: E.28, E.63, H.66, V.111, Y.138, Q.142 2 PLIP interactions: 2 interactions with chain I Metal complexes: I:E.28, I:E.28 FE.11: 4 residues within 4Å: Chain L: E.63, H.66, Y.138, Q.142 1 PLIP interactions: 1 interactions with chain L Metal complexes: L:H.66 FE.12: 4 residues within 4Å: Chain M: E.28, E.63, H.66, Q.142 3 PLIP interactions: 3 interactions with chain M Metal complexes: M:E.28, M:E.28, M:E.63 FE.13: 5 residues within 4Å: Chain P: H.66, E.108, E.141, Q.142 Ligands: FE.14 No protein-ligand interaction detected (PLIP) FE.14: 5 residues within 4Å: Chain P: Y.35, Q.59, E.63, E.108 Ligands: FE.13 2 PLIP interactions: 2 interactions with chain P Metal complexes: P:E.63, P:E.108 FE.15: 3 residues within 4Å: Chain Q: E.63, E.108, Q.142 3 PLIP interactions: 3 interactions with chain Q Metal complexes: Q:E.63, Q:E.108, Q:E.108 FE.16: 5 residues within 4Å: Chain S: E.28, E.63, H.66, E.108, Q.142 3 PLIP interactions: 3 interactions with chain S Metal complexes: S:E.28, S:E.63, S:H.66 FE.17: 4 residues within 4Å: Chain S: Y.35, Q.59, E.63, E.108 2 PLIP interactions: 2 interactions with chain S Metal complexes: S:E.63, S:E.63 FE.18: 5 residues within 4Å: Chain W: E.28, E.63, H.66, E.141, Q.142 3 PLIP interactions: 3 interactions with chain W Metal complexes: W:E.28, W:E.28, W:H.66

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, X. et al., Shape-Anisotropic Assembly of Protein Nanocages with Identical Building Blocks by Designed Intermolecular pi-pi Interactions. Adv Sci (2023)

Release Date

2024-01-31

Peptides

Ferritin heavy chain: ABCDEFGHIJKLMNOPQRSTUVWX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

M
M

N
N

O
O

P
P

Q
Q

R
R

S
S

T
T

U
U

V
V

W
W

X
X

Ferritin heavy chain

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