SMTL ID : 8jap.1

Cryo-EM structure of SARS-CoV-2 WT RBD in complex with W328-6H2 (local refinement)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-mer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 7 residues within 4Å: Chain A: F.338, G.339, F.342, N.343, V.367, L.368 Chain B: Q.1 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.342, A:L.368 NAG.2: 5 residues within 4Å: Chain A: R.328, F.329, P.330, N.331, L.533 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:R.328 Hydrogen bonds: A:R.328, A:F.329

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nan, X.Y. et al., Cryo-EM structure of SARS-CoV-2 WT RBD in complex with W328-6H2 (local refinement). To Be Published

Release Date

2024-12-18

Peptides

Spike glycoprotein: A
H chain of W328-6H2 Fab region: B
L chain of W328-6H2 Fab region: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
H

C
L

Spike glycoprotein

H chain of W328-6H2 Fab region

L chain of W328-6H2 Fab region

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