- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-24-mer
- Ligands
- 24 x FE2: FE (II) ION(Non-covalent)
- 12 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Covalent)(Non-covalent)
HEM.2: 8 residues within 4Å:- Chain A: F.26, F.49, M.52, E.56
- Chain B: I.22, F.26, F.49, M.52
6 PLIP interactions:3 interactions with chain A, 3 interactions with chain B,- Hydrophobic interactions: A:F.26, A:F.49, A:E.56, B:I.22, B:F.26, B:F.26
HEM.5: 9 residues within 4Å:- Chain C: N.23, F.26, F.49, M.52
- Chain D: L.19, I.22, F.26, F.49, M.52
9 PLIP interactions:6 interactions with chain D, 3 interactions with chain C,- Hydrophobic interactions: D:L.19, D:I.22, D:F.26, D:F.49, D:F.49, C:F.26, C:F.26, C:F.49
- pi-Stacking: D:F.49
HEM.8: 11 residues within 4Å:- Chain E: L.19, N.23, F.26, F.49, M.52
- Chain F: L.19, N.23, F.26, F.49, M.52, E.56
8 PLIP interactions:5 interactions with chain E, 3 interactions with chain F,- Hydrophobic interactions: E:L.19, E:F.26, E:F.26, E:F.26, E:F.49, F:L.19, F:F.26, F:F.49
HEM.12: 9 residues within 4Å:- Chain H: I.22, F.26, R.45, F.49, M.52
- Chain N: I.22, F.26, M.52, E.56
7 PLIP interactions:4 interactions with chain H, 3 interactions with chain N,- Hydrophobic interactions: H:I.22, H:F.26, H:F.26, H:F.49, N:I.22, N:F.26, N:E.56
HEM.15: 9 residues within 4Å:- Chain J: F.26, M.52, E.56
- Chain K: I.22, N.23, F.26, R.45, F.49, M.52
5 PLIP interactions:4 interactions with chain K, 1 interactions with chain J,- Hydrophobic interactions: K:F.26, K:F.26, K:F.49, J:F.26
- pi-Stacking: K:F.26
HEM.19: 9 residues within 4Å:- Chain L: N.23, F.26, F.49, M.52, E.56
- Chain M: I.22, F.26, F.49, M.52
5 PLIP interactions:4 interactions with chain M, 1 interactions with chain L,- Hydrophobic interactions: M:I.22, M:F.26, M:F.26, M:F.49, L:F.26
HEM.23: 10 residues within 4Å:- Chain O: L.19, N.23, F.26, F.49, M.52, E.56
- Chain P: L.19, F.26, F.49, M.52
4 PLIP interactions:2 interactions with chain O, 2 interactions with chain P,- Hydrophobic interactions: O:L.19, O:F.26, P:L.19, P:F.26
HEM.25: 10 residues within 4Å:- Chain Q: L.19, N.23, F.26, M.52, E.56
- Chain R: I.22, F.26, F.49, M.52, R.53
9 PLIP interactions:6 interactions with chain R, 3 interactions with chain Q,- Hydrophobic interactions: R:I.22, R:F.26, R:F.26, R:F.49, R:M.52, Q:L.19, Q:F.26, Q:E.56
- Hydrogen bonds: R:R.53
HEM.28: 12 residues within 4Å:- Chain I: L.19, I.22, N.23, F.26, R.45, M.52
- Chain S: L.19, I.22, N.23, F.26, F.49, M.52
8 PLIP interactions:5 interactions with chain S, 3 interactions with chain I,- Hydrophobic interactions: S:L.19, S:F.26, S:F.26, S:F.49, S:F.49, I:L.19, I:I.22, I:F.26
HEM.31: 8 residues within 4Å:- Chain T: F.26, M.52, E.56
- Chain U: I.22, N.23, F.26, F.49, M.52
5 PLIP interactions:4 interactions with chain U, 1 interactions with chain T,- Hydrophobic interactions: U:I.22, U:F.26, U:F.26, T:F.26
- pi-Stacking: U:F.26
HEM.33: 10 residues within 4Å:- Chain V: L.19, I.22, F.26, F.49, M.52, E.56
- Chain W: L.19, N.23, F.26, M.52
7 PLIP interactions:5 interactions with chain V, 2 interactions with chain W,- Hydrophobic interactions: V:L.19, V:I.22, V:F.26, V:F.26, V:F.49, W:L.19, W:F.26
HEM.35: 9 residues within 4Å:- Chain G: N.23, F.26, F.49, M.52
- Chain X: N.23, F.26, F.49, M.52, Y.71
7 PLIP interactions:4 interactions with chain X, 3 interactions with chain G,- Hydrophobic interactions: X:F.26, X:F.49, X:F.49, X:Y.71, G:F.26, G:F.26, G:F.49
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Jobichen, C. et al., Bacterioferritin nanocage structures uncover the biomineralization process in ferritins. Pnas Nexus (2023)
- Release Date
- 2023-08-02
- Peptides
- Bacterioferritin: ABCDEFGHIJKLMNOPQRSTUVWX
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
FF
EG
GH
HI
IJ
JK
KL
LM
MN
NO
OP
PQ
QR
RS
ST
TU
UV
VW
WX
X
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-24-mer
- Ligands
- 24 x FE2: FE (II) ION(Non-covalent)
- 12 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Covalent)(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Jobichen, C. et al., Bacterioferritin nanocage structures uncover the biomineralization process in ferritins. Pnas Nexus (2023)
- Release Date
- 2023-08-02
- Peptides
- Bacterioferritin: ABCDEFGHIJKLMNOPQRSTUVWX
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
FF
EG
GH
HI
IJ
JK
KL
LM
MN
NO
OP
PQ
QR
RS
ST
TU
UV
VW
WX
X