SMTL ID : 8jbi.1

SteC 202-375 mutant- C276S

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.36 Å

Oligo State

homo-tetramer

Ligands

4 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.1: 11 residues within 4Å: Chain A: G.38, S.39, Y.42, V.45, V.53, S.111, K.112, Y.113, I.114 Chain B: V.160 Ligands: MG.4 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.39, A:Y.42, A:K.112, A:I.114 Water bridges: A:S.111 AMP.3: 13 residues within 4Å: Chain A: N.149, L.151, V.160, D.161 Chain B: G.38, S.39, Y.42, V.53, S.111, K.112, Y.113, I.114 Ligands: MG.2 7 PLIP interactions: 6 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:S.39, B:K.112, B:I.114, A:N.149 Water bridges: B:S.111, B:S.111, B:S.111 AMP.5: 10 residues within 4Å: Chain C: G.38, S.39, V.53, S.111, K.112, Y.113, I.114 Chain D: N.149, V.160 Ligands: MG.9 8 PLIP interactions: 6 interactions with chain C, 2 interactions with chain D Hydrogen bonds: C:S.39, C:S.39, C:S.39, C:K.112, C:I.114, D:N.149 Water bridges: C:S.111, D:D.161 AMP.7: 15 residues within 4Å: Chain C: N.149, L.151, V.160, D.161 Chain D: G.38, S.39, Y.42, V.45, V.53, S.111, K.112, Y.113, I.114 Ligands: MG.6, MG.8 7 PLIP interactions: 2 interactions with chain C, 5 interactions with chain D Hydrogen bonds: C:N.149, D:S.39, D:Y.42, D:K.112, D:I.114 Water bridges: C:D.161, D:S.111

5 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)

MG.2: 4 residues within 4Å: Chain A: N.149, G.162, D.163 Ligands: AMP.3 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Ligand interactions Metal complexes: A:D.163, AMP.3 MG.4: 1 residues within 4Å: Ligands: AMP.1 No protein-ligand interaction detected (PLIP) MG.6: 4 residues within 4Å: Chain C: N.149, G.162, D.163 Ligands: AMP.7 No protein-ligand interaction detected (PLIP) MG.8: 1 residues within 4Å: Ligands: AMP.7 No protein-ligand interaction detected (PLIP) MG.9: 2 residues within 4Å: Chain D: N.149 Ligands: AMP.5 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, M. et al., Salmonella manipulates macrophage cytoskeleton to penetrate gut-vascular barrier and promote dissemination during infection. To Be Published

Release Date

2024-02-28

Peptides

Secreted effector kinase SteC: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
A

C
B

D
C

Secreted effector kinase SteC