SMTL ID : 8jby.1 (1 other biounit)

Vascular endothelial protein tyrosine phosphatase in complex with Cpd-2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.99 Å

Oligo State

monomer

Ligands

1 x U7L: 4-(hydroxymethyl)-5-(1-methylindol-3-yl)-1,2-oxazole-3-carboxylic acid(Non-covalent)

U7L.1: 12 residues within 4Å: Chain A: Y.57, I.60, D.194, H.195, C.228, S.229, A.230, V.232, G.233, R.234, H.269, Q.272 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:I.60, A:Q.272 Hydrogen bonds: A:Y.57, A:D.194, A:S.229, A:A.230, A:G.233, A:R.234 Water bridges: A:H.195, A:H.195 Salt bridges: A:R.234

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 3 residues within 4Å: Chain A: R.56, Y.57, V.134 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.56, A:Y.57 EDO.3: 5 residues within 4Å: Chain A: Q.41, A.65, T.66, L.265, H.266 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.41

1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.4: 9 residues within 4Å: Chain A: Q.127, C.128, H.138, W.140, V.161, L.162, P.163, H.188, T.190 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:C.128, A:L.162 Water bridges: A:V.129, A:T.166, A:T.190 Salt bridges: A:H.188

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Asano, W. et al., Fragment-Based Discovery of Novel VE-PTP Inhibitors Using Orthogonal Biophysical Techniques. Biochemistry (2023)

Release Date

2024-02-28

Peptides

Receptor-type tyrosine-protein phosphatase beta: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Receptor-type tyrosine-protein phosphatase beta

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