SMTL ID : 8je9.1 (1 other biounit)

Crystal structure of CGL1 from Crassostrea gigas, mannobiose-bound form (CGL1/Man(alpha)1-2Man)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.00 Å

Oligo State

homo-dimer

Ligands

1 x MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose(Non-covalent)

MAN-MAN.1: 11 residues within 4Å: Chain A: D.22, I.23, K.43, H.47, L.48, E.49, H.52, E.59, I.61, F.126, A.127 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.22, A:K.43, A:E.59, A:A.127

1 x ACY: ACETIC ACID(Non-functional Binders)

ACY.2: 4 residues within 4Å: Chain A: S.6, N.64, Y.65, E.66 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.65 Water bridges: A:R.32

1 x MAN: alpha-D-mannopyranose(Non-covalent)

MAN.3: 7 residues within 4Å: Chain B: D.22, I.23, K.43, L.48, E.59, F.126, A.127 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:D.22, B:K.43, B:E.59, B:A.127

1 x CAC: CACODYLATE ION(Non-covalent)

CAC.4: 7 residues within 4Å: Chain B: P.54, F.55, A.56, K.114, H.116, Y.123, E.130 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:A.56, B:K.114, B:K.114

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hatakeyama, T. et al., Mannose oligosaccharide recognition of CGL1, a mannose-specific lectin containing DM9 motifs from Crassostrea gigas, revealed by X-ray crystallographic analysis. J.Biochem. (2023)

Release Date

2023-10-25

Peptides

Natterin-3: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

Natterin-3

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