SMTL ID : 8jf3.1

C-Src in complex with compound 9

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.85 Å

Oligo State

homo-dimer

Ligands

2 x C0N: 2-[4-[4-[bis(oxidanylidene)-$l^5-sulfanyl]oxyphenyl]carbonylpiperazin-1-yl]-6-[(5-cyclopropyl-1H-pyrazol-3-yl)amino]-N-prop-2-ynyl-pyrimidine-4-carboxamide(Covalent)

C0N.1: 15 residues within 4Å: Chain A: L.23, G.24, E.30, V.31, A.43, K.45, T.88, E.89, Y.90, M.91, S.92, K.93, G.94, L.143, D.154 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.23, A:V.31, A:L.143 Hydrogen bonds: A:T.88, A:T.88, A:M.91, A:M.91, A:S.92 Salt bridges: A:D.154 C0N.2: 13 residues within 4Å: Chain B: L.23, G.24, V.31, A.43, K.45, T.88, E.89, Y.90, M.91, S.92, K.93, G.94, L.143 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:L.23, B:V.31 Hydrogen bonds: B:T.88, B:T.88, B:M.91, B:M.91, B:S.92 Salt bridges: B:D.154

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tang, G. et al., Global Reactivity Profiling of the Catalytic Lysine in Human Kinome for Covalent Inhibitor Development. Angew.Chem.Int.Ed.Engl. (2024)

Release Date

2024-02-14

Peptides

Proto-oncogene tyrosine-protein kinase Src: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Proto-oncogene tyrosine-protein kinase Src