SMTL ID : 8jfg.2 (1 other biounit)

Crystal structure of 3-oxoacyl-ACP reductase FabG in complex with NADP+ and 3-keto-octanoyl-ACP from Helicobacter pylori

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.83 Å

Oligo State

homo-tetramer

Ligands

4 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 24 residues within 4Å: Chain A: G.13, A.14, S.15, K.16, G.17, I.18, N.36, R.38, D.64, A.65, N.91, A.92, G.93, N.114, I.141, A.142, S.143, Y.156, K.160, P.186, G.187, I.189, D.192, M.193 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:S.15, A:K.16, A:K.16, A:I.18, A:N.36, A:R.38, A:D.64, A:D.64, A:A.65, A:A.66, A:N.91, A:G.93, A:Y.156, A:I.189 Salt bridges: A:K.16, A:R.38 NAP.2: 24 residues within 4Å: Chain B: G.13, S.15, K.16, G.17, I.18, N.36, R.38, S.39, F.63, D.64, A.65, A.66, N.91, A.92, G.93, V.94, N.114, I.141, A.142, S.143, Y.156, K.160, P.186, G.187 17 PLIP interactions: 17 interactions with chain B Hydrophobic interactions: B:I.18, B:P.186, B:P.186 Hydrogen bonds: B:I.18, B:S.39, B:A.65, B:A.66, B:G.93, B:N.114, B:N.114, B:S.143, B:Y.156, B:Y.156, B:K.160 Salt bridges: B:R.38 pi-Cation interactions: B:R.38, B:R.38 NAP.3: 23 residues within 4Å: Chain C: G.13, S.15, K.16, G.17, I.18, N.36, R.38, S.39, D.64, A.65, N.91, A.92, G.93, N.114, I.141, A.142, S.143, Y.156, K.160, P.186, G.187, I.189, T.191 17 PLIP interactions: 17 interactions with chain C Hydrophobic interactions: C:I.18, C:P.186 Hydrogen bonds: C:K.16, C:K.16, C:I.18, C:R.38, C:D.64, C:A.65, C:N.91, C:N.114, C:K.160, C:I.189, C:T.191, C:T.191 Salt bridges: C:K.16, C:R.38 pi-Cation interactions: C:R.38 NAP.4: 25 residues within 4Å: Chain D: G.13, S.15, K.16, G.17, I.18, N.36, R.38, S.39, F.63, D.64, A.65, A.66, N.91, A.92, G.93, N.114, I.141, A.142, S.143, Y.156, K.160, P.186, G.187, I.189, T.191 19 PLIP interactions: 19 interactions with chain D Hydrogen bonds: D:K.16, D:K.16, D:I.18, D:N.36, D:S.39, D:A.65, D:A.66, D:N.91, D:G.93, D:N.114, D:Y.156, D:K.160, D:I.189, D:T.191, D:T.191 Salt bridges: D:K.16, D:K.16, D:R.38 pi-Cation interactions: D:R.38

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhou, J. et al., The Molecular Basis of Catalysis by SDR Family Members Ketoacyl-ACP Reductase FabG and Enoyl-ACP Reductase FabI in Type-II Fatty Acid Biosynthesis. Angew.Chem.Int.Ed.Engl. (2023)

Release Date

2023-11-15

Peptides

3-oxoacyl-[acyl-carrier-protein] reductase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

C
E

D
F

3-oxoacyl-[acyl-carrier-protein] reductase

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