SMTL ID : 8jfl.1

PhK holoenzyme in active state, muscle isoform

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-4-4-4-mer

Ligands

8 x FAR: FARNESYL(Covalent)

FAR.1: 13 residues within 4Å: Chain A: K.1081, C.1082, L.1134, L.1137, E.1141, I.1149, A.1207, A.1208, V.1211, S.1218, C.1220 Chain B: R.330, V.333 8 PLIP interactions: 6 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:K.1081, A:L.1134, A:L.1137, A:I.1149, A:A.1208, A:V.1211, B:R.330, B:V.333 FAR.2: 13 residues within 4Å: Chain C: K.1081, C.1082, L.1134, L.1137, E.1141, I.1149, A.1207, A.1208, V.1211, S.1218, C.1220 Chain D: R.330, V.333 8 PLIP interactions: 6 interactions with chain C, 2 interactions with chain D Hydrophobic interactions: C:K.1081, C:L.1134, C:L.1137, C:I.1149, C:A.1208, C:V.1211, D:R.330, D:V.333 FAR.3: 13 residues within 4Å: Chain E: K.1081, C.1082, L.1134, L.1137, E.1141, I.1149, A.1207, A.1208, V.1211, S.1218, C.1220 Chain F: R.330, V.333 8 PLIP interactions: 6 interactions with chain E, 2 interactions with chain F Hydrophobic interactions: E:K.1081, E:L.1134, E:L.1137, E:I.1149, E:A.1208, E:V.1211, F:R.330, F:V.333 FAR.4: 13 residues within 4Å: Chain G: K.1081, C.1082, L.1134, L.1137, E.1141, I.1149, A.1207, A.1208, V.1211, S.1218, C.1220 Chain H: R.330, V.333 8 PLIP interactions: 6 interactions with chain G, 2 interactions with chain H Hydrophobic interactions: G:K.1081, G:L.1134, G:L.1137, G:I.1149, G:A.1208, G:V.1211, H:R.330, H:V.333 FAR.5: 13 residues within 4Å: Chain I: N.1013, E.1015, L.1016, L.1078, C.1090, L.1091, I.1092 Chain L: I.1008, V.1009, R.1012, N.1013, T.1070 Ligands: FAR.11 6 PLIP interactions: 3 interactions with chain L, 3 interactions with chain I Hydrophobic interactions: L:V.1009, L:R.1012, L:T.1070, I:N.1013, I:L.1016, I:L.1078 FAR.7: 14 residues within 4Å: Chain J: N.1013, E.1015, L.1016, M.1074, L.1078, C.1090, I.1092 Chain K: I.1008, V.1009, R.1012, N.1013, C.1066, T.1070 Ligands: FAR.9 7 PLIP interactions: 3 interactions with chain J, 4 interactions with chain K Hydrophobic interactions: J:L.1016, J:L.1078, J:I.1092, K:I.1008, K:V.1009, K:R.1012, K:T.1070 FAR.9: 14 residues within 4Å: Chain J: I.1008, V.1009, R.1012, N.1013, C.1066, T.1070 Chain K: N.1013, E.1015, L.1016, L.1078, C.1090, L.1091, I.1092 Ligands: FAR.7 7 PLIP interactions: 3 interactions with chain K, 4 interactions with chain J Hydrophobic interactions: K:N.1013, K:L.1016, K:L.1078, J:I.1008, J:V.1009, J:R.1012, J:T.1070 FAR.11: 12 residues within 4Å: Chain I: I.1008, V.1009, R.1012, N.1013, T.1070 Chain L: N.1013, E.1015, L.1016, L.1078, C.1090, I.1092 Ligands: FAR.5 8 PLIP interactions: 4 interactions with chain L, 4 interactions with chain I Hydrophobic interactions: L:N.1013, L:L.1016, L:L.1078, L:I.1092, I:I.1008, I:V.1009, I:R.1012, I:T.1070

4 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.6: 13 residues within 4Å: Chain I: R.211, Y.213, R.214, D.270, R.274, R.555, P.556, G.558, I.578, S.795, A.797, P.798, T.801 9 PLIP interactions: 9 interactions with chain I Hydrogen bonds: I:Y.213, I:D.270, I:R.274, I:R.274, I:T.801 Salt bridges: I:R.211, I:R.211, I:R.214, I:R.274 ADP.8: 14 residues within 4Å: Chain J: R.211, Y.213, R.214, D.270, R.274, R.555, P.556, G.558, I.578, S.794, S.795, P.798, H.799, T.801 6 PLIP interactions: 6 interactions with chain J Hydrogen bonds: J:Y.213, J:R.274, J:R.274 Salt bridges: J:R.211, J:R.211, J:R.214 ADP.10: 14 residues within 4Å: Chain K: R.211, Y.213, R.214, D.270, R.274, R.555, P.556, G.558, I.578, S.794, S.795, P.798, H.799, T.801 7 PLIP interactions: 7 interactions with chain K Hydrogen bonds: K:R.274, K:R.274, K:T.801, K:T.801 Salt bridges: K:R.211, K:R.211, K:R.214 ADP.12: 14 residues within 4Å: Chain L: R.211, Y.213, R.214, D.270, R.274, R.555, P.556, G.558, I.578, S.794, S.795, P.798, H.799, T.801 7 PLIP interactions: 7 interactions with chain L Hydrogen bonds: L:R.274, L:R.274, L:T.801, L:T.801 Salt bridges: L:R.211, L:R.211, L:R.214

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, X. et al., Architecture and activation of human muscle phosphorylase kinase. Nat Commun (2024)

Release Date

2024-04-03

Peptides

Phosphorylase b kinase regulatory subunit alpha, skeletal muscle isoform: ACEG
Phosphorylase b kinase gamma catalytic chain, skeletal muscle/heart isoform: BDFH
Phosphorylase b kinase regulatory subunit beta: IJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
E

E
M

G
I

B
C

D
G

F
O

H
K

I
B

J
F

K
J

L
N

Phosphorylase b kinase regulatory subunit alpha, skeletal muscle isoform

Phosphorylase b kinase gamma catalytic chain, skeletal muscle/heart isoform

Phosphorylase b kinase regulatory subunit beta

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