SMTL ID : 8jfm.1 (1 other biounit)

Crystal structure of enoyl-ACP reductase FabI in complex with NADH from Helicobacter pylori

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.21 Å

Oligo State

homo-tetramer

Ligands

4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 27 residues within 4Å: Chain A: G.13, V.14, A.15, S.19, I.20, L.40, L.44, L.63, D.64, V.65, S.91, V.92, A.93, I.118, L.143, S.144, Y.145, K.162, A.188, G.189, P.190, I.191, T.193, L.194, A.195, S.196, F.202 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:I.20, A:Y.145, A:A.188 Hydrogen bonds: A:G.13, A:S.19, A:I.20, A:D.64, A:D.64, A:V.65, A:V.92, A:V.92, A:A.93, A:K.162, A:I.191, A:I.191, A:T.193, A:A.195 Water bridges: A:A.21, A:L.143, A:Y.155, A:L.194 NAD.2: 27 residues within 4Å: Chain B: G.13, V.14, A.15, S.19, I.20, L.40, L.44, L.63, D.64, V.65, S.91, V.92, A.93, I.118, L.143, S.144, Y.145, K.162, A.188, G.189, P.190, I.191, T.193, L.194, A.195, S.196, F.202 21 PLIP interactions: 21 interactions with chain B Hydrophobic interactions: B:I.20, B:Y.145, B:A.188 Hydrogen bonds: B:G.13, B:S.19, B:I.20, B:D.64, B:D.64, B:V.65, B:S.66, B:V.92, B:V.92, B:A.93, B:K.162, B:I.191, B:I.191, B:T.193, B:A.195 Water bridges: B:S.91, B:S.91, B:L.194 NAD.3: 27 residues within 4Å: Chain C: G.13, V.14, A.15, S.19, I.20, L.40, L.44, L.63, D.64, V.65, S.91, V.92, A.93, I.118, L.143, S.144, Y.145, K.162, A.188, G.189, P.190, I.191, T.193, L.194, A.195, S.196, F.202 18 PLIP interactions: 18 interactions with chain C Hydrophobic interactions: C:I.20, C:Y.145, C:A.188 Hydrogen bonds: C:G.13, C:S.19, C:I.20, C:D.64, C:V.65, C:V.92, C:A.93, C:K.162, C:I.191, C:I.191, C:T.193, C:A.195 Water bridges: C:A.21, C:V.92, C:L.194 NAD.4: 27 residues within 4Å: Chain D: G.13, V.14, A.15, S.19, I.20, L.40, L.44, L.63, D.64, V.65, S.91, V.92, A.93, I.118, L.143, S.144, Y.145, K.162, A.188, G.189, P.190, I.191, T.193, L.194, A.195, S.196, F.202 20 PLIP interactions: 20 interactions with chain D Hydrophobic interactions: D:I.20, D:Y.145, D:Y.145, D:A.188 Hydrogen bonds: D:G.13, D:S.19, D:I.20, D:D.64, D:D.64, D:V.65, D:V.92, D:V.92, D:A.93, D:K.162, D:I.191, D:I.191, D:L.194, D:A.195 Water bridges: D:A.21, D:Y.155

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhou, J. et al., The Molecular Basis of Catalysis by SDR Family Members Ketoacyl-ACP Reductase FabG and Enoyl-ACP Reductase FabI in Type-II Fatty Acid Biosynthesis. Angew.Chem.Int.Ed.Engl. (2023)

Release Date

2023-11-15

Peptides

Enoyl-[acyl-carrier-protein] reductase [NADH]: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Enoyl-[acyl-carrier-protein] reductase [NADH]

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