SMTL ID : 8jgo.1

Crystal structure of Deinococcus radiodurans exopolyphosphatase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 9 residues within 4Å: Chain A: G.29, T.30, T.102, S.103, E.134, G.158, G.159, G.160, S.161 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:T.30, A:T.30, A:T.102, A:T.102, A:S.103, A:G.160, A:S.161 Water bridges: A:N.31, A:G.158, A:G.158, A:G.159 SO4.2: 5 residues within 4Å: Chain A: N.31, S.32, S.232, G.233, R.291 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:N.31, A:S.32, A:S.32, A:G.233 Water bridges: A:N.31, A:S.32, A:S.32, A:T.234, A:R.291, A:R.291 Salt bridges: A:R.291 SO4.3: 4 residues within 4Å: Chain A: S.341, R.343, Q.344, S.388 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:S.341, A:S.341, A:Q.344, A:S.388 Water bridges: A:R.369, A:R.369, A:R.369 Salt bridges: A:R.343 SO4.4: 1 residues within 4Å: Chain A: R.284 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.284, A:R.284 Salt bridges: A:R.284 SO4.5: 2 residues within 4Å: Chain A: R.119, R.477 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.119, A:R.477

1 x MG: MAGNESIUM ION(Non-covalent)

MG.6: 4 residues within 4Å: Chain A: H.360, H.397, E.398, D.473 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:H.360, A:H.397, A:E.398, A:D.473, A:D.473

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dai, S. et al., Structural Evolution of Bacterial Polyphosphate Degradation Enzyme for Phosphorus Cycling. Adv Sci (2024)

Release Date

2024-05-15

Peptides

Exopolyphosphatase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Exopolyphosphatase

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