SMTL ID : 8jhq.1

Cryo-EM structure of human S1P transporter SPNS2 bound with S1P

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

1 x S1P: (2S,3R,4E)-2-amino-3-hydroxyoctadec-4-en-1-yl dihydrogen phosphate(Non-covalent)

S1P.1: 12 residues within 4Å: Chain A: Y.139, T.537, S.541, T.544, L.547, G.548, F.581, E.648, F.652, T.658, Q.678, S.682 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.547, A:L.547, A:F.581, A:E.648, A:F.652 Hydrogen bonds: A:T.537, A:S.541, A:Q.678

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pang, B. et al., Molecular basis of Spns2-facilitated sphingosine-1-phosphate transport. Cell Res. (2024)

Release Date

2024-01-10

Peptides

Sphingosine-1-phosphate transporter SPNS2,GlgA glycogen synthase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Sphingosine-1-phosphate transporter SPNS2,GlgA glycogen synthase