SMTL ID : 8jhr.1

Cryo-EM structure of human S1P transporter SPNS2 bound with an inhibitor 16d

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

1 x YUX: 3-[3-(4-decylphenyl)-1,2,4-oxadiazol-5-yl]propan-1-amine(Non-covalent)

YUX.1: 7 residues within 4Å: Chain A: Y.142, I.260, S.264, T.351, G.355, F.459, W.462 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:I.260, A:F.459, A:W.462 pi-Stacking: A:Y.257, A:W.462, A:W.462

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pang, B. et al., Molecular basis of Spns2-facilitated sphingosine-1-phosphate transport. Cell Res. (2024)

Release Date

2024-01-10

Peptides

Sphingosine-1-phosphate transporter SPNS2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Sphingosine-1-phosphate transporter SPNS2