SMTL ID : 8ji8.1

Crystal Structure of Prophenoloxidase PPO6 chimeric mutant (F215EASNRAIVD224 to G215DGPDSVVR223) from Aedes aegypti

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.65 Å

Oligo State

homo-tetramer

Ligands

8 x CU: COPPER (II) ION(Non-covalent)

CU.1: 3 residues within 4Å: Chain A: H.362, H.366, H.402 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.362, A:H.366, A:H.402 CU.2: 3 residues within 4Å: Chain A: H.206, H.210, H.235 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.206, A:H.210, A:H.235 CU.11: 3 residues within 4Å: Chain B: H.362, H.366, H.402 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.362, B:H.366, B:H.402 CU.12: 4 residues within 4Å: Chain B: H.206, H.210, M.234, H.235 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.206, B:H.210, B:H.235 CU.17: 3 residues within 4Å: Chain C: H.362, H.366, H.402 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:H.362, C:H.366, C:H.402 CU.18: 3 residues within 4Å: Chain C: H.206, H.210, H.235 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:H.206, C:H.210, C:H.235 CU.25: 3 residues within 4Å: Chain D: H.206, H.210, H.235 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:H.206, D:H.210, D:H.235 CU.26: 3 residues within 4Å: Chain D: H.362, H.366, H.402 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:H.362, D:H.366, D:H.402

19 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 4 residues within 4Å: Chain A: A.648, R.649, T.650 Chain D: V.289 Ligand excluded by PLIP EDO.4: 4 residues within 4Å: Chain A: D.312, Y.315 Chain D: D.312, Y.315 Ligand excluded by PLIP EDO.5: 4 residues within 4Å: Chain A: R.261, I.290, K.291, D.292 Ligand excluded by PLIP EDO.6: 5 residues within 4Å: Chain A: R.15, R.75, L.275, V.276 Chain B: E.159 Ligand excluded by PLIP EDO.7: 5 residues within 4Å: Chain A: V.431, T.432, M.663, A.664, I.665 Ligand excluded by PLIP EDO.8: 8 residues within 4Å: Chain A: F.269, P.282, G.283, V.285 Chain B: F.269, G.283, V.285, H.373 Ligand excluded by PLIP EDO.9: 3 residues within 4Å: Chain A: R.534, N.538, R.539 Ligand excluded by PLIP EDO.13: 4 residues within 4Å: Chain B: R.261, I.290, K.291, D.292 Ligand excluded by PLIP EDO.14: 5 residues within 4Å: Chain B: I.178, P.179, E.198, F.473, T.474 Ligand excluded by PLIP EDO.15: 6 residues within 4Å: Chain A: R.37, I.41 Chain B: E.164, V.168, M.172, M.174 Ligand excluded by PLIP EDO.19: 4 residues within 4Å: Chain C: M.98, R.101, R.133, R.134 Ligand excluded by PLIP EDO.20: 7 residues within 4Å: Chain C: I.178, P.179, K.180, E.198, I.200, F.473, T.474 Ligand excluded by PLIP EDO.21: 4 residues within 4Å: Chain C: H.191, W.194, N.249, K.590 Ligand excluded by PLIP EDO.22: 5 residues within 4Å: Chain C: N.243, R.253, V.254, S.403, L.521 Ligand excluded by PLIP EDO.23: 5 residues within 4Å: Chain A: T.650 Chain C: A.288, V.289, K.291, T.372 Ligand excluded by PLIP EDO.27: 7 residues within 4Å: Chain C: F.269, G.283, V.285 Chain D: G.283, R.284, V.285, H.373 Ligand excluded by PLIP EDO.28: 1 residues within 4Å: Chain D: L.333 Ligand excluded by PLIP EDO.29: 4 residues within 4Å: Chain D: T.548, V.549, C.580, G.581 Ligand excluded by PLIP EDO.30: 3 residues within 4Å: Chain D: P.65, L.67, M.71 Ligand excluded by PLIP

3 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.10: 6 residues within 4Å: Chain A: H.208, G.579, C.580, C.627, G.628, V.629 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.579, A:C.580, A:C.580, A:G.628 TRS.16: 7 residues within 4Å: Chain B: H.208, C.578, G.579, C.580, C.627, G.628, V.629 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:H.208, B:C.580 TRS.24: 7 residues within 4Å: Chain C: H.208, C.578, G.579, C.580, C.627, G.628, V.629 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:C.580, C:C.580

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhu, X. et al., Mosquitoes have evolved two types of prophenoloxidases. To Be Published

Release Date

2023-11-01

Peptides

TK receptor: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

TK receptor