SMTL ID : 8jib.1

Crystal Structure of Prophenoloxidase PPO6 from Aedes aegypti

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.15 Å

Oligo State

homo-12-mer

Ligands

24 x CU: COPPER (II) ION(Non-covalent)

CU.1: 5 residues within 4Å: Chain A: H.363, H.367, F.399, H.403 Ligands: CU.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.363, A:H.367, A:H.403 CU.2: 4 residues within 4Å: Chain A: H.206, H.210, H.236 Ligands: CU.1 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.206, A:H.210, A:H.236 CU.6: 4 residues within 4Å: Chain B: H.206, H.210, H.236 Ligands: CU.7 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.206, B:H.210, B:H.236 CU.7: 5 residues within 4Å: Chain B: H.363, H.367, F.399, H.403 Ligands: CU.6 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.363, B:H.367, B:H.403 CU.8: 4 residues within 4Å: Chain C: H.206, H.210, H.236 Ligands: CU.9 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:H.206, C:H.210, C:H.236 CU.9: 5 residues within 4Å: Chain C: H.363, H.367, F.399, H.403 Ligands: CU.8 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:H.363, C:H.367, C:H.403 CU.10: 4 residues within 4Å: Chain D: H.206, H.210, H.236 Ligands: CU.11 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:H.206, D:H.210, D:H.236 CU.11: 5 residues within 4Å: Chain D: H.363, H.367, F.399, H.403 Ligands: CU.10 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:H.363, D:H.367, D:H.403 CU.14: 4 residues within 4Å: Chain E: H.206, H.210, H.236 Ligands: CU.15 3 PLIP interactions: 3 interactions with chain E Metal complexes: E:H.206, E:H.210, E:H.236 CU.15: 5 residues within 4Å: Chain E: H.363, H.367, F.399, H.403 Ligands: CU.14 3 PLIP interactions: 3 interactions with chain E Metal complexes: E:H.363, E:H.367, E:H.403 CU.16: 4 residues within 4Å: Chain F: H.206, H.210, H.236 Ligands: CU.17 3 PLIP interactions: 3 interactions with chain F Metal complexes: F:H.206, F:H.210, F:H.236 CU.17: 5 residues within 4Å: Chain F: H.363, H.367, F.399, H.403 Ligands: CU.16 3 PLIP interactions: 3 interactions with chain F Metal complexes: F:H.363, F:H.367, F:H.403 CU.19: 4 residues within 4Å: Chain G: H.206, H.210, H.236 Ligands: CU.20 3 PLIP interactions: 3 interactions with chain G Metal complexes: G:H.206, G:H.210, G:H.236 CU.20: 5 residues within 4Å: Chain G: H.363, H.367, F.399, H.403 Ligands: CU.19 3 PLIP interactions: 3 interactions with chain G Metal complexes: G:H.363, G:H.367, G:H.403 CU.21: 4 residues within 4Å: Chain H: H.206, H.210, H.236 Ligands: CU.22 3 PLIP interactions: 3 interactions with chain H Metal complexes: H:H.206, H:H.210, H:H.236 CU.22: 5 residues within 4Å: Chain H: H.363, H.367, F.399, H.403 Ligands: CU.21 3 PLIP interactions: 3 interactions with chain H Metal complexes: H:H.363, H:H.367, H:H.403 CU.24: 4 residues within 4Å: Chain I: H.206, H.210, H.236 Ligands: CU.25 3 PLIP interactions: 3 interactions with chain I Metal complexes: I:H.206, I:H.210, I:H.236 CU.25: 5 residues within 4Å: Chain I: H.363, H.367, F.399, H.403 Ligands: CU.24 3 PLIP interactions: 3 interactions with chain I Metal complexes: I:H.363, I:H.367, I:H.403 CU.26: 4 residues within 4Å: Chain J: H.206, H.210, H.236 Ligands: CU.27 3 PLIP interactions: 3 interactions with chain J Metal complexes: J:H.206, J:H.210, J:H.236 CU.27: 5 residues within 4Å: Chain J: H.363, H.367, F.399, H.403 Ligands: CU.26 3 PLIP interactions: 3 interactions with chain J Metal complexes: J:H.363, J:H.367, J:H.403 CU.28: 4 residues within 4Å: Chain K: H.206, H.210, H.236 Ligands: CU.29 3 PLIP interactions: 3 interactions with chain K Metal complexes: K:H.206, K:H.210, K:H.236 CU.29: 5 residues within 4Å: Chain K: H.363, H.367, F.399, H.403 Ligands: CU.28 3 PLIP interactions: 3 interactions with chain K Metal complexes: K:H.363, K:H.367, K:H.403 CU.30: 4 residues within 4Å: Chain L: H.206, H.210, H.236 Ligands: CU.31 3 PLIP interactions: 3 interactions with chain L Metal complexes: L:H.206, L:H.210, L:H.236 CU.31: 5 residues within 4Å: Chain L: H.363, H.367, F.399, H.403 Ligands: CU.30 3 PLIP interactions: 3 interactions with chain L Metal complexes: L:H.363, L:H.367, L:H.403

7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 1 residues within 4Å: Chain A: D.226 No protein-ligand interaction detected (PLIP) EDO.4: 3 residues within 4Å: Chain A: D.408, Q.411 Chain C: K.302 1 PLIP interactions: 1 interactions with chain C Water bridges: C:K.302 EDO.5: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) EDO.12: 2 residues within 4Å: Chain D: E.309 Chain F: E.309 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:E.309 EDO.13: 2 residues within 4Å: Chain D: E.555, R.559 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:E.555 EDO.18: 3 residues within 4Å: Chain E: K.302 Chain F: E.412, I.415 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:K.302 EDO.23: 4 residues within 4Å: Chain H: E.309, D.313 Chain I: D.313 Chain K: D.313 1 PLIP interactions: 1 interactions with chain K Hydrogen bonds: K:D.313

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhu, X. et al., Mosquitoes have evolved two types of prophenoloxidases. To Be Published

Release Date

2023-11-29

Peptides

TK receptor: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

TK receptor