SMTL ID : 8jle.1

Cryo-EM structure of SV2A LD4 in complex with BoNT/A2 Hc in the SV2A-levetiracetam-BoNT/A2 Hc complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 2.82 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-FUC.1: 6 residues within 4Å: Chain A: N.74, I.93, N.94 Chain B: F.83, R.194, G.422 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:F.83

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 1 residues within 4Å: Chain A: N.19 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.19 NAG.3: 2 residues within 4Å: Chain A: D.49, N.69 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yamagata, A. et al., Structural basis for antiepileptic drugs and botulinum neurotoxin recognition of SV2A. Nat Commun (2024)

Release Date

2024-05-01

Peptides

Synaptic vesicle glycoprotein 2A: A
Botulinum neurotoxin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Synaptic vesicle glycoprotein 2A

Botulinum neurotoxin

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