SMTL ID : 8jli.1

Cryo-EM structure of SV2A dimer in complex levetiracetam

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 3.38 Å

Oligo State

homo-dimer

Ligands

2 x UKX: (2S)-2-(2-oxidanylidenepyrrolidin-1-yl)butanamide

UKX.1: 8 residues within 4Å: Chain A: I.281, C.305, W.308, Y.469, Y.470, I.671, W.674, D.678 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:W.308, A:Y.469, A:I.671 Hydrogen bonds: A:D.678 UKX.2: 7 residues within 4Å: Chain B: I.281, C.305, W.308, Y.470, I.671, W.674, D.678 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:W.308, B:I.671 Hydrogen bonds: B:D.678

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yamagata, A. et al., Structural basis for antiepileptic drugs and botulinum neurotoxin recognition of SV2A. Nat Commun (2024)

Release Date

2024-05-01

Peptides

Synaptic vesicle glycoprotein 2A: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Membrane

We predict this structure to be a membrane protein.
Show / Hide

Synaptic vesicle glycoprotein 2A

Related Entries With Identical Sequence