SMTL ID : 8jmr.1

Crystal structure of hinokiresinol synthase in complex with 1,7-bis(4-hydroxyphenyl)hepta-1,6-dien-3-one

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-1-1-mer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 9 residues within 4Å: Chain A: L.24, Y.26, K.164, D.165 Chain B: L.49, Y.51, K.189, D.190 Ligands: UR0.2 8 PLIP interactions: 3 interactions with chain A, 5 interactions with chain B Hydrogen bonds: A:Y.26, B:Y.51, B:Y.51, B:D.190 Water bridges: A:N.11, B:K.189 Salt bridges: A:K.164, B:K.189

1 x UR0: 1,7-bis(4-hydroxyphenyl)hepta-1,6-dien-3-one(Non-covalent)

UR0.2: 14 residues within 4Å: Chain A: M.89, L.130, K.164, D.165, V.167, R.169 Chain B: W.38, L.49, L.114, M.157, K.189, D.190, R.194 Ligands: SO4.1 12 PLIP interactions: 7 interactions with chain B, 5 interactions with chain A Hydrophobic interactions: B:W.38, B:W.38, B:L.49, B:R.194, A:L.130, A:V.167 Hydrogen bonds: B:K.189, B:K.189, B:R.194, A:K.164, A:K.164, A:R.169

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ushimaru, R. et al., Structural and Mechanistic Insights into the C-C Bond-Forming Rearrangement Reaction Catalyzed by Heterodimeric Hinokiresinol Synthase. J.Am.Chem.Soc. (2023)

Release Date

2023-12-20

Peptides

Hinokiresinol synthase alpha subunit: A
Hinokiresinol synthase beta subunit: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Hinokiresinol synthase alpha subunit

Hinokiresinol synthase beta subunit

Related Entries With Identical Sequence