SMTL ID : 8jmz.1 (1 other biounit)

FGFR1 kinase domain with sulfatinib

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.99 Å

Oligo State

monomer

Ligands

1 x UKI: N-(2-(dimethylamino)ethyl)-1-(3-((4-((2-methyl-1H-indol-5-yl)oxy)pyrimidin-2-yl)amino)phenyl)methanesulfonamide(Non-covalent)

UKI.1: 19 residues within 4Å: Chain A: L.29, V.37, A.57, K.59, E.76, I.90, V.104, V.106, E.107, Y.108, A.109, G.112, N.113, E.116, R.172, L.175, D.186, N.204 Ligands: GOL.8 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:L.29, A:V.37, A:A.57, A:K.59, A:K.59, A:V.104, A:V.106, A:V.106, A:L.175 Hydrogen bonds: A:E.76, A:A.109, A:A.109, A:N.113, A:N.113, A:R.172 Water bridges: A:E.116, A:E.116, A:D.186 Salt bridges: A:E.116

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 7 residues within 4Å: Chain A: R.115, R.206, L.207, K.210, W.211, S.244, P.245 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:L.207, A:S.244, A:S.244 Salt bridges: A:R.115, A:K.210 SO4.3: 5 residues within 4Å: Chain A: R.172, T.202, N.204, R.206 Ligands: GOL.8 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:T.202, A:T.202, A:N.204, A:N.204 Water bridges: A:N.173 Salt bridges: A:R.172, A:R.206 SO4.4: 5 residues within 4Å: Chain A: R.122, S.129, G.243, S.244 Ligands: SO4.6 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.129, A:S.129, A:S.244 Water bridges: A:Q.119 Salt bridges: A:R.122 SO4.5: 1 residues within 4Å: Chain A: R.154 3 PLIP interactions: 3 interactions with chain A Water bridges: A:N.88, A:R.154 Salt bridges: A:R.154 SO4.6: 5 residues within 4Å: Chain A: S.129, W.236, T.240, P.247 Ligands: SO4.4 2 PLIP interactions: 2 interactions with chain A Water bridges: A:S.129, A:S.244 SO4.7: 5 residues within 4Å: Chain A: K.111, E.116, Y.117, A.120, R.121 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.111 Water bridges: A:R.121, A:R.121 Salt bridges: A:R.121

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.8: 6 residues within 4Å: Chain A: R.172, N.173, L.175, D.186 Ligands: UKI.1, SO4.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.172, A:R.172

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lin, Q. et al., Structural basis and selectivity of sulfatinib binding to FGFR and CSF-1R. Commun Chem (2024)

Release Date

2024-03-27

Peptides

Fibroblast growth factor receptor 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Fibroblast growth factor receptor 1

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