SMTL ID : 8joj.1

Crystal structure of 3-ketosteroid delta1-dehydrogenase from Rhodococcus erythropolis SQ1 in complex with 9,11-epoxy-17-hydroxypregn-4-ene-3,20-dione actate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.82 Å

Oligo State

monomer

Ligands

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 43 residues within 4Å: Chain A: V.26, G.27, S.28, G.29, G.30, L.49, E.50, K.51, T.52, G.56, G.57, T.58, S.59, Y.61, S.62, G.63, A.64, S.65, L.166, S.206, V.207, L.208, A.241, A.242, G.243, M.265, A.270, N.271, T.272, D.274, W.293, F.307, I.367, L.460, G.489, N.490, Y.500, G.504, V.505, P.506, L.507, G.508 Ligands: UU0.2 26 PLIP interactions: 26 interactions with chain A Hydrophobic interactions: A:T.58, A:M.265, A:F.307, A:L.460, A:L.460 Hydrogen bonds: A:G.27, A:E.50, A:E.50, A:K.51, A:K.51, A:T.58, A:S.59, A:S.59, A:G.63, A:A.64, A:S.65, A:S.65, A:L.208, A:L.208, A:N.271, A:D.274, A:N.490, A:N.490, A:N.490, A:G.504, A:L.507

1 x UU0: 9,11-epoxy-17-hydroxypregn-4-ene-3,20-dione actate(Non-covalent)

UU0.2: 19 residues within 4Å: Chain A: S.62, G.63, S.65, F.129, Y.132, I.181, G.182, R.184, F.307, V.309, Y.331, I.365, I.367, F.431, L.460, Y.500, P.503, G.504 Ligands: FAD.1 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.129, A:F.129, A:F.129, A:I.181, A:Y.331, A:P.503 Hydrogen bonds: A:G.504

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Song, S.K. et al., Crystal structure of 3-ketosteroid delta1-dehydrogenase from Rhodococcus erythropolis SQ1 in complex with 9,11-epoxy-17-hydroxypregn-4-ene-3,20-dione actate. To Be Published

Release Date

2023-07-12

Peptides

3-ketosteroid dehydrogenase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

3-ketosteroid dehydrogenase

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