SMTL ID : 8jot.1

Crystal structure of CSF-1R kinase domain with sulfatinib

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.69 Å

Oligo State

monomer

Ligands

1 x UKI: N-(2-(dimethylamino)ethyl)-1-(3-((4-((2-methyl-1H-indol-5-yl)oxy)pyrimidin-2-yl)amino)phenyl)methanesulfonamide(Non-covalent)

UKI.1: 14 residues within 4Å: Chain A: L.58, V.66, A.84, E.134, Y.135, C.136, T.137, Y.138, G.139, D.140, R.217, L.220, F.232, A.235 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:L.58, A:A.84, A:Y.135, A:L.220, A:L.220, A:F.232, A:F.232, A:F.232, A:A.235 Hydrogen bonds: A:C.136, A:C.136, A:T.137 Water bridges: A:L.58, A:D.140

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: V.18, R.19, W.20, E.103, M.107, D.231 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.19, A:W.20, A:E.103, A:D.231 Water bridges: A:D.231

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lin, Q. et al., Structural basis and selectivity of sulfatinib binding to FGFR and CSF-1R. Commun Chem (2024)

Release Date

2024-03-27

Peptides

Macrophage colony-stimulating factor 1 receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Macrophage colony-stimulating factor 1 receptor