SMTL ID : 8jpq.1

SARS-CoV-2 Mpro in complex with D-5-96

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

1 x ACY: ACETIC ACID(Non-functional Binders)

ACY.1: 4 residues within 4Å: Chain A: G.143, S.144, C.145 Ligands: ALA.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.143, A:C.145

1 x ALA: ALANINE(Non-covalent)

ALA.2: 8 residues within 4Å: Chain A: T.25, T.26, L.27, H.41, G.143, C.145 Ligands: ACY.1, ILE.3 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:T.25, A:L.27 Hydrogen bonds: A:H.41, A:G.143

1 x ILE: ISOLEUCINE(Non-covalent)

ILE.3: 7 residues within 4Å: Chain A: T.24, T.25, T.26, N.142, G.143 Ligands: ALA.2, V3E.4 4 PLIP interactions: 4 interactions with chain A, Hydrophobic interactions: A:T.26, A:N.142 Hydrogen bonds: A:T.26, A:T.26

1 x V3E: methyl (2~{S})-2-azanyl-3-(2-hydroxyphenyl)propanoate(Non-covalent)

V3E.4: 7 residues within 4Å: Chain A: T.24, T.25, C.44, T.45, S.46, M.49 Ligands: ILE.3 2 PLIP interactions: 1 Ligand-Ligand interactions, 1 interactions with chain A Hydrogen bonds: A.2, A:C.44

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, M. et al., SARS-CoV-2 Mpro in complex with D-5-96. To Be Published

Release Date

2023-08-23

Peptides

ORF1a polyprotein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ORF1a polyprotein

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