SMTL ID : 8jpr.1

Cryo-EM structure of Y553C human ClC-6

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-dimer

Ligands

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 7 residues within 4Å: Chain A: S.157, I.159, G.201, G.487, L.488, F.489, Y.576 Ligand excluded by PLIP CL.2: 4 residues within 4Å: Chain A: E.198, E.200, G.201, F.489 Ligand excluded by PLIP CL.6: 7 residues within 4Å: Chain B: S.157, I.159, G.201, G.487, L.488, F.489, Y.576 Ligand excluded by PLIP CL.7: 4 residues within 4Å: Chain B: E.198, E.200, G.201, F.489 Ligand excluded by PLIP

2 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 2 residues within 4Å: Chain A: Y.48 Ligands: ATP.4 No protein-ligand interaction detected (PLIP) MG.5: 2 residues within 4Å: Chain B: Y.48 Ligands: ATP.8 No protein-ligand interaction detected (PLIP)

2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.4: 19 residues within 4Å: Chain A: Y.48, E.49, S.50, E.606, N.608, L.609, T.610, V.629, H.630, H.631, A.632, R.833, H.834, I.847, I.848, T.849, H.851, N.852 Ligands: MG.3 21 PLIP interactions: 21 interactions with chain A Hydrogen bonds: A:S.50, A:S.50, A:S.50, A:S.50, A:E.606, A:T.610, A:T.610, A:H.631, A:T.849, A:T.849, A:R.850, A:N.852 Salt bridges: A:H.631, A:R.833, A:R.833, A:H.834, A:H.834, A:H.851, A:H.851 pi-Stacking: A:H.630, A:H.630 ATP.8: 19 residues within 4Å: Chain B: Y.48, E.49, S.50, E.606, N.608, L.609, T.610, V.629, H.630, H.631, A.632, R.833, H.834, I.847, I.848, T.849, H.851, N.852 Ligands: MG.5 21 PLIP interactions: 21 interactions with chain B Hydrogen bonds: B:S.50, B:S.50, B:S.50, B:S.50, B:E.606, B:T.610, B:T.610, B:H.631, B:T.849, B:T.849, B:R.850, B:N.852 Salt bridges: B:H.631, B:R.833, B:R.833, B:H.834, B:H.834, B:H.851, B:H.851 pi-Stacking: B:H.630, B:H.630

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, S.S., Molecular basis of ClC-6 function and its impairment in human disease. Sci Adv (2023)

Release Date

2023-09-20

Peptides

H(+)/Cl(-) exchange transporter 6: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Membrane

We predict this structure to be a membrane protein.
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H(+)/Cl(-) exchange transporter 6