SMTL ID : 8jrl.1

Crystal structure of P450 TleB with an indole alkaloid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.07 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 27 residues within 4Å: Chain A: L.77, I.104, L.105, H.112, R.116, F.123, L.252, A.255, G.256, T.259, V.260, Q.263, M.296, L.301, T.306, R.309, G.359, F.360, G.361, I.364, H.365, R.366, C.367, L.368, G.369, A.373 Ligands: V3X.2 17 PLIP interactions: 17 interactions with chain A, Hydrophobic interactions: A:L.105, A:F.123, A:L.252, A:A.255, A:T.259, A:Q.263, A:L.301, A:L.368, A:A.373 Hydrogen bonds: A:T.306 Water bridges: A:H.365 Salt bridges: A:H.112, A:R.116, A:R.309, A:H.365 pi-Stacking: A:F.360 Metal complexes: A:C.367

1 x V3X: (2~{S})-~{N}-[(2~{S})-1-(4-fluoranyl-1~{H}-indol-3-yl)-3-oxidanyl-propan-2-yl]-3-methyl-2-sulfanyl-butanamide

V3X.2: 12 residues within 4Å: Chain A: T.102, L.105, F.189, S.190, V.251, A.255, T.259, T.306, F.307, Q.407, V.408 Ligands: HEM.1 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.105, A:V.251 Hydrogen bonds: A:F.189 Water bridges: A:S.190

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ge, X.Y. et al., Regulation of P450 TleB catalytic flow for the synthesis of sulfur-containing indole alkaloids by substrate structure-directed strategy. and protein engineering. Sci China Chem (2023)

Release Date

2024-04-17

Peptides

Cytochrome P-450: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cytochrome P-450

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