SMTL ID : 8jtj.1

Cryo-EM structure of GeoCas9-sgRNA-dsDNA ternary complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

1 x DG- DG- DG- DC- DG- DC- DG- DA- DA: DNA (5'-D(P*GP*GP*GP*CP*GP*CP*GP*AP*A)-3')(Non-covalent)

DG-DG-DG-DC-DG-DC-DG-DA-DA.1: 24 residues within 4Å: Chain A: P.40, Q.41, K.832, T.907, K.908, N.909, N.925, I.926, Y.944, N.961, K.1014, T.1015, I.1016, D.1017, S.1018, R.1035 Chain C: T.1, T.2, C.3, G.4, C.5, G.6, C.7, C.8 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:N.1020 Hydrogen bonds: A:Q.817, A:Q.817, A:E.818, A:T.819, A:R.821, A:N.1020, A:R.1035, A:R.1035, A:R.1035, A:G.1038 Salt bridges: A:K.994

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shen, P. et al., Structure of Geobacillus stearothermophilus Cas9: Insights into the Catalytic Process and Thermostability of CRISPR-Cas9. Acs Catalysis (2024)

Release Date

2024-06-05

Peptides

CRISPR-associated endonuclease Cas9: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CRISPR-associated endonuclease Cas9

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