SMTL ID : 8juc.1

Identification of small-molecule binding sites of a ubiquitin-conjugating enzyme-UBE2T through fragment-based screening

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.54 Å

Oligo State

monomer

Ligands

1 x V23: 7-methyl-2-(trifluoromethyl)-3~{H}-[1,2,4]triazolo[1,5-a]pyridin-5-one(Non-covalent)

V23.1: 8 residues within 4Å: Chain A: R.8, R.11, E.12, M.15, E.19, P.21, N.105, A.107 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:M.15, A:A.107 Water bridges: A:E.12

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 2 residues within 4Å: Chain A: P.22, Q.114 1 PLIP interactions: 1 interactions with chain A Water bridges: A:Q.114 EDO.3: 1 residues within 4Å: Chain A: P.102 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Loh, Y.Y. et al., Identification of small-molecule binding sites of a ubiquitin-conjugating enzyme-UBE2T through fragment-based screening. Protein Sci. (2024)

Release Date

2024-02-28

Peptides

Ubiquitin-conjugating enzyme E2 T: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ubiquitin-conjugating enzyme E2 T

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