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SMTL ID : 8jue.1
Crystal structure of glutaminase C in complex with compound 11
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 2.39 Å
Oligo State
homo-tetramer
Ligands
2 x
V59
:
2-(3-phenoxyphenyl)-N-[5-[[(3R)-1-pyridazin-3-ylpyrrolidin-3-yl]amino]-1,3,4-thiadiazol-2-yl]ethanamide
(Non-covalent)
V59.1:
15 residues within 4Å:
Chain A:
F.256
,
K.258
,
L.259
,
F.260
,
L.261
,
E.263
,
Y.332
Chain B:
F.256
,
K.258
,
L.259
,
F.260
,
L.261
,
Y.332
Chain D:
R.255
Ligands:
V59.2
15
PLIP interactions
:
7 interactions with chain A
,
8 interactions with chain B
Hydrophobic interactions:
A:F.256
,
A:K.258
,
A:E.263
,
B:F.256
,
B:L.259
,
B:F.260
Hydrogen bonds:
A:F.260
,
A:L.261
,
A:L.261
,
A:Y.332
,
B:K.258
,
B:K.258
,
B:F.260
,
B:L.261
pi-Cation interactions:
B:K.258
V59.2:
18 residues within 4Å:
Chain A:
R.255
Chain B:
R.255
Chain C:
F.256
,
K.258
,
L.259
,
F.260
,
L.261
,
N.262
,
E.263
,
Y.332
Chain D:
R.255
,
F.256
,
K.258
,
L.259
,
F.260
,
L.261
,
Y.332
Ligands:
V59.1
16
PLIP interactions
:
7 interactions with chain D
,
8 interactions with chain C
,
1 interactions with chain A
Hydrophobic interactions:
D:F.256
,
D:L.259
,
D:L.259
,
D:F.260
,
C:F.256
,
C:F.256
,
C:K.258
,
C:E.263
,
A:R.255
Hydrogen bonds:
D:K.258
,
D:F.260
,
D:L.261
,
C:F.260
,
C:L.261
,
C:L.261
,
C:Y.332
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Sun, H. et al., Targeting the Subpocket Enables the Discovery of Thiadiazole-Pyridazine Derivatives as Glutaminase C Inhibitors. Acs Med.Chem.Lett. (2023)
Release Date
2023-10-11
Peptides
Glutaminase kidney isoform, mitochondrial:
A
B
C
D
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
C
C
D
D
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Secondary Structure
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Glutaminase kidney isoform, mitochondrial
Related Entries With Identical Sequence
8jub.1
Cartoon
Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog
Background
Transparent
Resolution
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