SMTL ID : 8jux.1 (1 other biounit)

Crystal structure of SARS-CoV-2 Papain-like protease complexed with noncovalent inhibitor SR-01

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: H.89, D.108 No protein-ligand interaction detected (PLIP)

1 x V00: ~{N}-[(3-fluorophenyl)methyl]-1-[(1~{R})-1-(3-methoxynaphthalen-1-yl)ethyl]piperidine-4-carboxamide(Non-covalent)

V00.2: 12 residues within 4Å: Chain A: L.162, G.163, D.164, P.247, P.248, Y.264, G.266, N.267, Y.268, Q.269, Y.273, T.301 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:P.248, A:Y.264, A:Y.268 Hydrogen bonds: A:Y.268, A:Y.273 Salt bridges: A:D.164 pi-Stacking: A:Y.268, A:Y.268

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hsieh, Y.-J. et al., Crystal structure of SARS-CoV-2 Papain-like protease complexed with noncovalent inhibitor SR-01. To Be Published

Release Date

2024-07-03

Peptides

Non-structural protein 7: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Non-structural protein 7

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