SMTL ID : 8juy.1

Human ATAD2 Walker B mutant-H3/H4K5Q complex, ATP state (Class II)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-hexamer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Covalent)

ADP.1: 3 residues within 4Å: Chain A: G.70, I.205, K.238 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.71, A:K.95

5 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Covalent)(Non-covalent)

ATP.2: 12 residues within 4Å: Chain A: D.158, R.184, R.187 Chain B: P.67, G.68, T.69, G.70, K.71, T.72, L.73, D.129, Q.130 13 PLIP interactions: 9 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:G.68, B:G.70, B:K.71, B:T.72, B:T.72, B:L.73, B:D.129, B:Q.130, A:D.158 Salt bridges: B:K.71, A:R.184, A:R.187, A:R.187 ATP.3: 15 residues within 4Å: Chain B: D.158, R.184, R.187 Chain C: S.25, G.27, P.67, G.68, T.69, G.70, K.71, T.72, L.73, I.205, H.209, G.234 15 PLIP interactions: 13 interactions with chain C, 2 interactions with chain B Hydrogen bonds: C:G.27, C:G.27, C:G.68, C:T.69, C:G.70, C:K.71, C:T.72, C:T.72, C:T.72, C:L.73 Salt bridges: C:K.71, C:K.71, C:K.71, B:R.184, B:R.187 ATP.4: 19 residues within 4Å: Chain C: L.154, D.158, R.184, R.187 Chain D: G.27, P.67, G.68, T.69, G.70, K.71, T.72, L.73, Q.130, N.173, I.205, H.209, G.234, A.235, K.238 17 PLIP interactions: 12 interactions with chain D, 5 interactions with chain C Hydrogen bonds: D:G.27, D:G.68, D:T.69, D:G.70, D:T.72, D:T.72, D:T.72, D:L.73, D:Q.130 Salt bridges: D:K.71, D:K.71, D:K.71, C:R.184, C:R.184, C:R.184, C:R.187, C:R.187 ATP.5: 16 residues within 4Å: Chain D: R.184, R.187 Chain E: S.25, G.27, P.66, P.67, G.68, T.69, G.70, K.71, T.72, L.73, N.173, I.205, H.209, K.238 14 PLIP interactions: 11 interactions with chain E, 3 interactions with chain D Hydrogen bonds: E:G.27, E:G.68, E:T.69, E:G.70, E:T.72, E:T.72, E:Q.130, E:N.173, E:N.173 Salt bridges: E:K.71, E:K.71, D:R.184, D:R.184, D:R.187 ATP.6: 14 residues within 4Å: Chain E: R.184, P.185 Chain F: G.68, L.196, A.201, R.202, I.205, Y.232, C.233, G.234, A.235, D.236, I.237, K.238 10 PLIP interactions: 9 interactions with chain F, 1 interactions with chain E Hydrogen bonds: F:R.202, F:C.233, F:G.234, F:G.234, F:A.235, F:D.236, F:D.236, F:I.237, F:K.238 Salt bridges: E:R.184

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cho, C. et al., Structure of the human ATAD2 AAA+ histone chaperone reveals mechanism of regulation and inter-subunit communication. Commun Biol (2023)

Release Date

2023-10-18

Peptides

ATPase family AAA domain-containing protein 2: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

ATPase family AAA domain-containing protein 2

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