SMTL ID : 8juz.1

Human ATAD2 Walker B mutant-H3/H4K5Q complex, ATP state (Class III)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-hexamer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 16 residues within 4Å: Chain A: S.25, G.27, L.29, P.67, G.68, T.69, G.70, K.71, T.72, L.73, R.76, I.205, H.209, G.234, A.235, K.238 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:G.27, A:G.68, A:G.70, A:K.71, A:T.72, A:T.72, A:T.72, A:L.73, A:R.76, A:K.238 Salt bridges: A:R.76

5 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)(Covalent)

ATP.2: 19 residues within 4Å: Chain A: D.158, R.184, R.187 Chain B: S.25, V.26, G.27, P.67, G.68, T.69, G.70, K.71, T.72, L.73, Q.130, N.173, I.205, H.209, G.234, K.238 20 PLIP interactions: 15 interactions with chain B, 5 interactions with chain A Hydrogen bonds: B:S.25, B:G.27, B:G.68, B:T.69, B:G.70, B:K.71, B:T.72, B:T.72, B:L.73, B:Q.130, B:N.173, B:K.238, B:K.238, A:D.158, A:R.184 Salt bridges: B:K.71, B:K.71, A:R.184, A:R.184, A:R.187 ATP.3: 16 residues within 4Å: Chain B: D.158, R.184, R.187 Chain C: S.25, G.27, G.68, T.69, G.70, K.71, T.72, L.73, Q.130, I.205, H.209, G.234, A.235 17 PLIP interactions: 4 interactions with chain B, 13 interactions with chain C Salt bridges: B:R.184, B:R.184, B:R.184, B:R.187, C:K.71, C:K.71 Hydrogen bonds: C:G.27, C:G.27, C:G.68, C:T.69, C:G.70, C:K.71, C:T.72, C:T.72, C:T.72, C:L.73, C:Q.130 ATP.4: 16 residues within 4Å: Chain C: R.184, R.187 Chain D: G.27, P.67, G.68, T.69, G.70, K.71, T.72, L.73, Q.130, N.173, I.205, H.209, G.234, K.238 18 PLIP interactions: 14 interactions with chain D, 4 interactions with chain C Hydrogen bonds: D:G.27, D:G.27, D:G.68, D:T.69, D:G.70, D:K.71, D:T.72, D:T.72, D:T.72, D:L.73, D:Q.130, D:N.173, C:R.184 Salt bridges: D:K.71, D:K.71, C:R.184, C:R.184, C:R.187 ATP.5: 18 residues within 4Å: Chain D: R.184, R.187 Chain E: S.25, G.27, P.67, G.68, T.69, G.70, K.71, T.72, L.73, R.76, N.173, I.205, H.209, G.234, A.235, K.238 22 PLIP interactions: 18 interactions with chain E, 4 interactions with chain D Hydrogen bonds: E:G.27, E:G.68, E:T.69, E:G.70, E:T.72, E:T.72, E:T.72, E:L.73, E:R.76, E:R.76, E:N.173, E:N.173, E:N.173, E:K.238, E:K.238 Salt bridges: E:K.71, E:K.71, E:R.76, D:R.184, D:R.184, D:R.184, D:R.187 ATP.6: 10 residues within 4Å: Chain E: R.184 Chain F: P.67, G.68, T.69, G.70, K.71, L.73, Q.130, N.173, A.235 12 PLIP interactions: 10 interactions with chain F, 2 interactions with chain E Hydrogen bonds: F:G.68, F:T.69, F:G.70, F:K.71, F:T.72, F:T.72, F:T.72, F:Q.130, F:N.173, E:R.184 Salt bridges: F:K.71, E:R.184

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cho, C. et al., Structure of the human ATAD2 AAA+ histone chaperone reveals mechanism of regulation and inter-subunit communication. Commun Biol (2023)

Release Date

2023-10-18

Peptides

ATPase family AAA domain-containing protein 2: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

ATPase family AAA domain-containing protein 2

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