SMTL ID : 8jvl.1

Identification and characterization of inhibitors covalently modifying catalytic cysteine of UBE2T and blocking ubiquitin transfer

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.06 Å

Oligo State

monomer

Ligands

1 x V5L: 1-(4-methoxyphenyl)-1,2,3,4-tetrazole(Covalent)

V5L.1: 5 residues within 4Å: Chain A: C.88, D.90, K.97, D.124 Ligands: EDO.2 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:D.90, A:K.97 Water bridges: A:L.89, A:L.89 pi-Cation interactions: A:K.97

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 7 residues within 4Å: Chain A: N.80, C.88, L.89, D.90, N.121, D.124 Ligands: V5L.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.90, A:D.90, A:N.121

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Anantharajan, J. et al., Identification and characterization of inhibitors covalently modifying catalytic cysteine of UBE2T and blocking ubiquitin transfer. Biochem.Biophys.Res.Commun. (2023)

Release Date

2023-11-29

Peptides

Ubiquitin-conjugating enzyme E2 T: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ubiquitin-conjugating enzyme E2 T

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