SMTL ID : 8jws.2 (2 other biounits)

ePHD domain of PHD Finger Protein 7 (PHF7)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

3 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.11, C.14, H.36, C.39 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.11, A:C.14, A:H.36, A:C.39 ZN.2: 4 residues within 4Å: Chain A: C.76, C.79, H.98, C.101 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.76, A:C.79, A:H.98, A:C.101 ZN.3: 4 residues within 4Å: Chain A: C.88, C.93, C.119, H.122 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.88, A:C.93, A:C.119, A:H.122

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 2 residues within 4Å: Chain A: N.90, Q.92 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.90, A:Q.92 Water bridges: A:D.91, A:D.91, A:D.91, A:D.91

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, H.S. et al., Molecular basis for PHF7-mediated ubiquitination of histone H3. Genes Dev. (2023)

Release Date

2023-12-20

Peptides

PHD finger protein 7: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

PHD finger protein 7

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