SMTL ID : 8jwu.3 (2 other biounits)

PHD Finger Protein 7 (PHF7) fused to UBE2D2 via a (GSGG)3 linker

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.58 Å

Oligo State

monomer

Ligands

8 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.20, C.23, H.45, C.48 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.20, A:C.23, A:H.45, A:C.48 ZN.2: 4 residues within 4Å: Chain A: C.85, C.88, H.107, C.110 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.85, A:C.88, A:H.107, A:C.110 ZN.3: 4 residues within 4Å: Chain A: C.97, C.102, C.128, H.131 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.97, A:C.102, A:C.128, A:H.131 ZN.4: 4 residues within 4Å: Chain A: C.147, C.150, H.173, C.176 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.147, A:C.150, A:H.173, A:C.176 ZN.5: 4 residues within 4Å: Chain A: C.166, C.167, C.191, C.194 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.166, A:C.167, A:C.191, A:C.194 ZN.6: 5 residues within 4Å: Chain A: C.260, T.262, C.263, C.284, C.287 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.260, A:C.263, A:C.284, A:C.287 ZN.7: 4 residues within 4Å: Chain A: C.235, C.240, H.269, C.272 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.235, A:C.240, A:H.269, A:C.272 ZN.8: 2 residues within 4Å: Chain A: H.187, D.213 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.187, A:D.213, A:D.213

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, H.S. et al., Molecular basis for PHF7-mediated ubiquitination of histone H3. Genes Dev. (2023)

Release Date

2023-12-20

Peptides

PHD finger protein 7,Ubiquitin-conjugating enzyme E2 D2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

PHD finger protein 7,Ubiquitin-conjugating enzyme E2 D2

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