SMTL ID : 8jwz.1

Crystal structure of A2AR-T4L in complex with AB928

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.37 Å

Oligo State

monomer

Ligands

18 x OLA: OLEIC ACID(Non-covalent)(Non-functional Binders)

OLA.1: 5 residues within 4Å: Chain A: P.403, I.406, I.407, F.410, A.420 Ligand excluded by PLIP OLA.2: 7 residues within 4Å: Chain A: Y.51, V.54, S.55, A.58, W.137 Ligands: OLA.10, OLA.18 Ligand excluded by PLIP OLA.3: 7 residues within 4Å: Chain A: C.36, V.54, A.58, I.61, A.62 Ligands: OLA.9, OLA.10 Ligand excluded by PLIP OLA.4: 10 residues within 4Å: Chain A: V.65, P.69, F.70, T.73, A.80, A.81, I.88 Ligands: OLA.11, OLA.13, OLA.19 Ligand excluded by PLIP OLA.5: 8 residues within 4Å: Chain A: F.101, W.151, N.183, F.188, A.192, C.193 Ligands: OLA.7, OLA.14 Ligand excluded by PLIP OLA.6: 4 residues within 4Å: Chain A: L.200, G.203, V.204, R.207 Ligand excluded by PLIP OLA.7: 4 residues within 4Å: Chain A: N.183, Y.187, A.192 Ligands: OLA.5 Ligand excluded by PLIP OLA.9: 6 residues within 4Å: Chain A: V.33, C.36, W.37, W.40, V.65 Ligands: OLA.3 Ligand excluded by PLIP OLA.10: 3 residues within 4Å: Ligands: OLA.2, OLA.3, OLA.18 Ligand excluded by PLIP OLA.11: 9 residues within 4Å: Chain A: S.14, I.18, L.22, I.29, G.64, P.69, I.72, T.76 Ligands: OLA.4 Ligand excluded by PLIP OLA.12: 6 residues within 4Å: Chain A: S.15, I.18, T.19, L.22, A.23, L.27 Ligand excluded by PLIP OLA.13: 6 residues within 4Å: Chain A: V.65, L.66, F.70, I.88 Ligands: OLA.4, OLA.19 Ligand excluded by PLIP OLA.14: 6 residues within 4Å: Chain A: A.142, I.143, T.146, W.151, F.188 Ligands: OLA.5 Ligand excluded by PLIP OLA.15: 7 residues within 4Å: Chain A: L.198, L.199, L.202, A.391, I.392, V.394, A.398 Ligand excluded by PLIP OLA.17: 9 residues within 4Å: Chain A: F.52, A.105, I.108, L.123, V.124, R.128, I.132, I.135, C.136 Ligand excluded by PLIP OLA.18: 8 residues within 4Å: Chain A: K.130, I.133, A.134, W.137, F.141 Ligands: OLA.2, OLA.10, OLA.19 Ligand excluded by PLIP OLA.19: 7 residues within 4Å: Chain A: A.81, H.83, G.84, F.87 Ligands: OLA.4, OLA.13, OLA.18 Ligand excluded by PLIP OLA.22: 5 residues within 4Å: Chain A: I.24, T.434, V.438, F.441, I.442 Ligand excluded by PLIP

1 x NA: SODIUM ION(Non-functional Binders)

NA.8: 2 residues within 4Å: Chain A: D.60, S.99 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.99, A:S.99

2 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)

OLC.16: 9 residues within 4Å: Chain A: G.13, S.14, V.16, Y.17, C.400, Y.426, V.430, L.431, T.434 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.16, A:Y.17, A:Y.426, A:V.430, A:L.431, A:T.434 Hydrogen bonds: A:S.14 OLC.21: 12 residues within 4Å: Chain A: L.27, L.30, G.31, V.33, L.34, P.440, F.441, A.444, R.451, F.454, R.455, I.458 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:L.27, A:L.30, A:L.30, A:V.33, A:L.34, A:P.440, A:F.441, A:F.441, A:F.441, A:F.454, A:F.454 Hydrogen bonds: A:R.455 Water bridges: A:R.459

1 x U30: 3-[2-azanyl-6-[1-[[6-(2-oxidanylpropan-2-yl)pyridin-2-yl]methyl]-1,2,3-triazol-4-yl]pyrimidin-4-yl]-2-methyl-benzenecarbonitrile(Non-covalent)

U30.20: 18 residues within 4Å: Chain A: Y.17, A.71, I.74, S.75, V.92, L.93, T.96, F.176, E.177, M.185, W.401, L.404, H.405, N.408, L.422, M.425, Y.426, I.429 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:Y.17, A:V.92, A:F.176, A:W.401, A:L.404, A:L.422, A:M.425, A:Y.426, A:I.429 Hydrogen bonds: A:N.408, A:N.408 Water bridges: A:F.176, A:N.189 Salt bridges: A:E.177 pi-Stacking: A:F.176

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.23: 7 residues within 4Å: Chain A: R.115, I.116, P.117, L.118, R.119, R.223, L.228 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:L.118, A:R.119, A:R.119, A:R.223, A:R.223, A:L.228

1 x CLR: CHOLESTEROL(Non-covalent)

CLR.24: 4 residues within 4Å: Chain A: C.409, F.410, F.413, C.414 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.410, A:F.410, A:F.410, A:F.413

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Weng, Y. et al., Structural insight into the dual-antagonistic mechanism of AB928 on adenosine A 2 receptors. Sci China Life Sci (2024)

Release Date

2023-08-16

Peptides

Adenosine receptor A2a,Endolysin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Adenosine receptor A2a,Endolysin

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