SMTL ID : 8jy0.1 (2 other biounits)

Crystal structure of RhoBAST complexed with TMR-DN

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.75 Å

Oligo State

monomer

Ligands

2 x MG: MAGNESIUM ION(Non-functional Binders)

MG.1: 3 residues within 4Å: Chain B: C.7, A.35, G.36 No protein-ligand interaction detected (PLIP) MG.2: 4 residues within 4Å: Chain B: G.34, A.35, C.51, C.52 No protein-ligand interaction detected (PLIP)

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-functional Binders)

GDP.3: 2 residues within 4Å: Chain B: G.1, C.64 No protein-ligand interaction detected (PLIP)

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.4: 2 residues within 4Å: Ligands: V8C.5, V7U.6 No protein-ligand interaction detected (PLIP)

1 x V8C: 5-aminocarbonyl-2-[3-(dimethylamino)-6-dimethylazaniumylidene-xanthen-9-yl]benzoate(Non-functional Binders)

V8C.5: 6 residues within 4Å: Chain B: A.31, G.46, U.48, A.49 Ligands: PGE.4, V7U.6 No protein-ligand interaction detected (PLIP)

1 x V7U: 2,4-dinitroaniline(Non-functional Binders)

V7U.6: 3 residues within 4Å: Chain B: G.46 Ligands: PGE.4, V8C.5 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, Y. et al., Structural mechanisms for binding and activation of a contact-quenched fluorophore by RhoBAST. Nat Commun (2024)

Release Date

2024-05-29

Peptides

U1 small nuclear ribonucleoprotein A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

U1 small nuclear ribonucleoprotein A

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