SMTL ID : 8jzs.1

Outward-facing SLC15A4 dimer

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-dimer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 1 residues within 4Å: Chain A: N.436 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.436 NAG.4: 1 residues within 4Å: Chain B: N.436 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.436

4 x CLR: CHOLESTEROL(Non-covalent)

CLR.2: 8 residues within 4Å: Chain A: L.548, L.551, I.552, V.555 Chain B: L.392, L.397, L.398, F.411 10 PLIP interactions: 6 interactions with chain B, 4 interactions with chain A Hydrophobic interactions: B:L.392, B:L.397, B:L.397, B:L.398, B:F.411, A:L.548, A:L.551, A:I.552, A:V.555 Hydrogen bonds: B:L.398 CLR.3: 6 residues within 4Å: Chain A: A.418, I.421, L.422, W.453 Chain B: F.417, A.541 7 PLIP interactions: 5 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:I.421, A:I.421, A:L.422, A:W.453, A:W.453, B:F.417, B:A.541 CLR.5: 5 residues within 4Å: Chain A: F.417 Chain B: A.418, I.421, L.422, W.453 7 PLIP interactions: 6 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:A.418, B:I.421, B:I.421, B:L.422, B:L.422, B:W.453, A:F.417 CLR.6: 8 residues within 4Å: Chain A: L.392, L.397, L.398, F.411 Chain B: L.548, L.551, I.552, V.555 10 PLIP interactions: 4 interactions with chain B, 6 interactions with chain A Hydrophobic interactions: B:L.548, B:L.551, B:I.552, B:V.555, A:L.392, A:L.397, A:L.397, A:L.398, A:F.411 Hydrogen bonds: A:L.398

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, X. et al., Structural basis for recruitment of TASL by SLC15A4 in human endolysosomal TLR signaling. Nat Commun (2023)

Release Date

2023-09-27

Peptides

lysosomal transporter: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Membrane

We predict this structure to be a membrane protein.
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lysosomal transporter