SMTL ID : 8jzx.1

SLC15A4 inhibitor complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-dimer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 1 residues within 4Å: Chain A: N.398 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.398 NAG.5: 1 residues within 4Å: Chain B: N.398 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.398

4 x CLR: CHOLESTEROL(Non-covalent)

CLR.2: 9 residues within 4Å: Chain A: L.510, L.513, I.514, V.517 Chain B: L.354, L.359, L.360, F.373, F.429 10 PLIP interactions: 6 interactions with chain B, 4 interactions with chain A Hydrophobic interactions: B:L.354, B:L.359, B:L.359, B:F.373, B:F.429, A:L.510, A:L.513, A:I.514, A:V.517 Hydrogen bonds: B:L.360 CLR.4: 4 residues within 4Å: Chain A: A.380, I.383, L.384, W.415 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:A.380, A:I.383, A:L.384, A:L.384, A:W.415 CLR.6: 8 residues within 4Å: Chain A: M.375, F.379, A.502, A.503 Chain B: C.376, I.383, L.384, W.415 5 PLIP interactions: 1 interactions with chain A, 4 interactions with chain B Hydrophobic interactions: A:F.379, B:I.383, B:I.383, B:W.415, B:W.415 CLR.7: 9 residues within 4Å: Chain A: L.354, L.359, L.360, F.373, F.429 Chain B: L.510, L.513, I.514, V.517 10 PLIP interactions: 6 interactions with chain A, 4 interactions with chain B Hydrophobic interactions: A:L.354, A:L.359, A:L.359, A:F.373, A:F.429, B:L.510, B:L.513, B:I.514, B:V.517 Hydrogen bonds: A:L.360

2 x Q09: 2-(4-ethoxyphenyl)-N-[3-[(2R)-2-methylpiperidin-1-yl]propyl]quinoline-4-carboxamide(Non-covalent)

Q09.3: 18 residues within 4Å: Chain A: E.44, R.48, Y.52, K.172, I.202, N.203, Y.293, W.294, Y.297, Q.301, T.332, D.335, E.427, A.430, S.431, L.435, F.454, F.455 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:K.172, A:I.202, A:Y.293, A:W.294, A:L.435, A:F.454, A:F.455 pi-Cation interactions: A:K.172 Q09.8: 18 residues within 4Å: Chain B: E.44, R.48, Y.52, K.172, I.202, N.203, Y.293, W.294, Y.297, Q.301, T.332, D.335, E.427, A.430, S.431, L.435, F.454, F.455 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:K.172, B:I.202, B:Y.293, B:W.294, B:L.435, B:F.454, B:F.455 pi-Cation interactions: B:K.172

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Boeszoermenyi, A. et al., A conformation-locking inhibitor of SLC15A4 with TASL proteostatic anti-inflammatory activity. Nat Commun (2023)

Release Date

2023-09-27

Peptides

lysosomal transporter,ALFA tag,lysosomal transporter: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Membrane

We predict this structure to be a membrane protein.
Show / Hide

lysosomal transporter,ALFA tag,lysosomal transporter

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