SMTL ID : 8k11.1

SID1 transmembrane family member 2

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-dimer

Ligands

4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 2 residues within 4Å: Chain A: D.31, N.53 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 3 residues within 4Å: Chain B: D.31, E.33, N.53 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 4 residues within 4Å: Chain A: S.162, N.164, Q.276, T.278 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 2 residues within 4Å: Chain B: N.164, Q.276 No protein-ligand interaction detected (PLIP)

8 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.5: 3 residues within 4Å: Chain A: N.26, S.28, L.46 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.26 NAG.6: 1 residues within 4Å: Chain A: N.59 No protein-ligand interaction detected (PLIP) NAG.7: 3 residues within 4Å: Chain A: K.121, N.122, E.125 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:K.121 Hydrogen bonds: A:N.122 NAG.8: 4 residues within 4Å: Chain A: E.41, N.43, P.138, N.140 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.43, A:N.140 NAG.9: 3 residues within 4Å: Chain B: N.26, S.28, L.46 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.26 NAG.10: 1 residues within 4Å: Chain B: N.59 No protein-ligand interaction detected (PLIP) NAG.11: 2 residues within 4Å: Chain B: K.121, N.122 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:K.121 Hydrogen bonds: B:N.122 NAG.12: 4 residues within 4Å: Chain B: E.41, N.43, P.138, N.140 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.43, B:N.140

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zheng, L. et al., Cryo-EM structures of human SID-1 transmembrane family proteins and implications for their low-pH-dependent RNA transport activity. Cell Res. (2024)

Release Date

2024-07-10

Peptides

SID1 transmembrane family member 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

SID1 transmembrane family member 2