SMTL ID : 8k1p.1

mycobacterial efflux pump, ADP+vanadate bound state

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-2-mer

Ligands

2 x CDL: CARDIOLIPIN(Non-covalent)

CDL.1: 22 residues within 4Å: Chain A: L.109, A.113, L.116, T.117, R.120, R.206, R.209, A.210, F.213, A.214, G.217, A.221, W.315, G.318, L.321, M.370, A.374, W.479, L.482, V.483, I.486 Ligands: CDL.2 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:L.109, A:L.109, A:L.109, A:A.113, A:L.116, A:L.116, A:F.213, A:F.213, A:F.213, A:W.315, A:L.321, A:W.479, A:W.479, A:L.482, A:V.483, A:I.486 Hydrogen bonds: A:T.117 Salt bridges: A:R.120, A:R.206, A:R.209, A:R.209 CDL.2: 13 residues within 4Å: Chain A: V.39, S.40, L.43, L.47, R.120, R.473, P.476, W.479, G.480, V.483, A.487, F.497 Ligands: CDL.1 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.43, A:L.47, A:V.483, A:A.487, A:F.497 Hydrogen bonds: A:R.473 Salt bridges: A:R.120, A:R.473

2 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 4 residues within 4Å: Chain B: S.49, E.161 Ligands: ADP.4, VO4.5 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:S.49 MG.6: 3 residues within 4Å: Chain C: S.49, D.160 Ligands: ATP.7 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:S.49

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.4: 15 residues within 4Å: Chain A: R.547 Chain B: F.19, A.24, P.43, N.44, G.45, A.46, G.47, K.48, S.49, T.50 Chain C: K.131, S.137 Ligands: MG.3, VO4.5 14 PLIP interactions: 12 interactions with chain B, 2 interactions with chain C Hydrogen bonds: B:P.43, B:G.45, B:A.46, B:G.47, B:K.48, B:S.49, B:S.49, B:T.50, B:T.50, C:K.131, C:K.131 Salt bridges: B:K.48 pi-Stacking: B:F.19, B:F.19

1 x VO4: VANADATE ION(Non-covalent)

VO4.5: 9 residues within 4Å: Chain B: N.44, K.48, E.161, H.193 Chain C: S.137, G.139, G.165 Ligands: MG.3, ADP.4 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain C Hydrogen bonds: B:N.44, B:K.48, B:H.193, C:S.137, C:G.139

1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.7: 14 residues within 4Å: Chain B: K.131, T.135, S.137, G.139 Chain C: F.19, P.43, N.44, A.46, G.47, K.48, S.49, T.50, H.193 Ligands: MG.6 14 PLIP interactions: 2 interactions with chain B, 12 interactions with chain C Hydrogen bonds: B:K.131, B:S.137, C:N.44, C:A.46, C:G.47, C:K.48, C:S.49, C:T.50, C:T.50 Salt bridges: C:K.48, C:K.48, C:H.193 pi-Stacking: C:F.19, C:F.19

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, Y. et al., mycobacterial efflux pump, ADP+vanadate bound state. To Be Published

Release Date

2024-07-17

Peptides

Multidrug efflux system permease protein Rv1217c: A
Multidrug efflux system ATP-binding protein Rv1218c: BC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Membrane

We predict this structure to be a membrane protein.
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Multidrug efflux system permease protein Rv1217c

Multidrug efflux system ATP-binding protein Rv1218c

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