SMTL ID : 8k1r.1

YeeE(TsuA)-YeeD(TsuB) complex for thiosulfate uptake

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-dimer

Ligands

26 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)(Non-functional Binders)

OLC.1: 10 residues within 4Å: Chain A: I.14, V.15, R.18, K.189, F.190, L.201, V.202, L.205 Ligands: OLC.2, OLC.5 Ligand excluded by PLIP OLC.2: 8 residues within 4Å: Chain A: F.10, R.18, V.254, A.255, V.258, A.259 Ligands: OLC.1, OLC.5 Ligand excluded by PLIP OLC.3: 5 residues within 4Å: Chain A: A.172, I.175, L.176, F.179, G.180 Ligand excluded by PLIP OLC.4: 5 residues within 4Å: Chain A: L.83, L.87, I.278, M.323 Ligands: OLC.6 Ligand excluded by PLIP OLC.5: 6 residues within 4Å: Chain A: K.189, F.190, L.201 Ligands: OLC.1, OLC.2, OLC.11 Ligand excluded by PLIP OLC.6: 6 residues within 4Å: Chain A: I.76, W.127, W.128, W.131, F.135 Ligands: OLC.4 Ligand excluded by PLIP OLC.7: 9 residues within 4Å: Chain A: W.225, I.249, L.250, A.257, F.262, P.439 Ligands: OLC.8, OLC.9, OLC.10 Ligand excluded by PLIP OLC.8: 12 residues within 4Å: Chain A: V.99, W.107, F.262, L.264 Chain B: F.112, V.271, L.274, I.278, L.281 Ligands: OLC.7, OLC.10, OLC.23 Ligand excluded by PLIP OLC.9: 11 residues within 4Å: Chain A: F.229, G.231, F.232, N.235, S.236, P.237, L.238 Chain B: F.112, L.115, A.124 Ligands: OLC.7 Ligand excluded by PLIP OLC.10: 2 residues within 4Å: Ligands: OLC.7, OLC.8 Ligand excluded by PLIP OLC.11: 5 residues within 4Å: Chain A: F.179, K.193, V.197 Ligands: OLC.5, OLC.12 Ligand excluded by PLIP OLC.12: 4 residues within 4Å: Chain A: L.48, I.51, I.175 Ligands: OLC.11 Ligand excluded by PLIP OLC.13: 9 residues within 4Å: Chain B: I.14, V.15, R.18, F.190, C.198, L.201, V.202, L.205 Ligands: OLC.18 Ligand excluded by PLIP OLC.14: 6 residues within 4Å: Chain B: F.10, I.14, R.18, V.258, A.259 Ligands: OLC.18 Ligand excluded by PLIP OLC.15: 8 residues within 4Å: Chain B: G.160, L.161, I.165, L.168, V.169, A.172, L.173 Ligands: OLC.17 Ligand excluded by PLIP OLC.16: 4 residues within 4Å: Chain B: L.48, I.175, F.179 Ligands: OLC.17 Ligand excluded by PLIP OLC.17: 8 residues within 4Å: Chain B: I.51, L.168, I.175, L.176, F.179, G.180 Ligands: OLC.15, OLC.16 Ligand excluded by PLIP OLC.18: 5 residues within 4Å: Chain B: K.189, F.190, C.198 Ligands: OLC.13, OLC.14 Ligand excluded by PLIP OLC.19: 10 residues within 4Å: Chain A: F.112, L.115, A.124 Chain B: L.228, F.229, G.231, F.232, S.236, L.238 Ligands: OLC.20 Ligand excluded by PLIP OLC.20: 9 residues within 4Å: Chain B: G.100, I.249, L.250, G.253, A.257, F.262 Ligands: OLC.19, OLC.21, OLC.26 Ligand excluded by PLIP OLC.21: 10 residues within 4Å: Chain A: V.271, L.274 Chain B: W.107, A.110, L.111, W.225, F.262, L.264 Ligands: OLC.20, OLC.26 Ligand excluded by PLIP OLC.22: 5 residues within 4Å: Chain B: L.31, L.32, W.321, T.322, W.325 Ligand excluded by PLIP OLC.23: 8 residues within 4Å: Chain B: L.87, V.271, Q.275, I.278, M.323, L.327 Ligands: OLC.8, OLC.25 Ligand excluded by PLIP OLC.24: 8 residues within 4Å: Chain B: V.30, K.34, N.36, W.177, F.298, W.310, I.314, I.317 Ligand excluded by PLIP OLC.25: 5 residues within 4Å: Chain B: I.76, W.128, W.131, F.135 Ligands: OLC.23 Ligand excluded by PLIP OLC.26: 2 residues within 4Å: Ligands: OLC.20, OLC.21 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ikei, M. et al., Structure and function of YeeE-YeeD complex for sophisticated thiosulfate uptake. To Be Published

Release Date

2024-03-27

Peptides

Spirochaeta thermophila YeeE(TsuA)-YeeD(TsuB),UPF0033 domain-containing protein, SirA-like domain-containing protein (chimera): AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Membrane

We predict this structure to be a membrane protein.
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Spirochaeta thermophila YeeE(TsuA)-YeeD(TsuB),UPF0033 domain-containing protein, SirA-like domain-containing protein (chimera)