- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.48 Å
- Oligo State
- homo-dimer
- Ligands
- 6 x SO4: SULFATE ION(Non-functional Binders)
- 4 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)
PG4.2: 11 residues within 4Å:- Chain A: E.110, D.111, Q.112, P.261, K.278, P.279
- Chain B: D.282, T.285, Q.286, R.289, D.364
6 PLIP interactions:3 interactions with chain A, 3 interactions with chain B- Hydrogen bonds: A:E.110, A:Q.112, B:D.282, B:R.289
- Water bridges: A:A.262, B:R.289
PG4.12: 9 residues within 4Å:- Chain A: E.24, H.27, R.28, H.72, Q.97, Y.118, N.121, S.122, H.123
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:E.24, A:E.24, A:R.28, A:Y.118
PG4.15: 11 residues within 4Å:- Chain A: D.282, T.285, Q.286, R.289, D.364
- Chain B: E.110, D.111, Q.112, P.261, K.278, P.279
5 PLIP interactions:2 interactions with chain A, 3 interactions with chain B- Hydrogen bonds: A:R.289, B:E.110, B:Q.112
- Water bridges: A:R.289, B:A.262
PG4.25: 9 residues within 4Å:- Chain B: E.24, H.27, R.28, H.72, Q.97, Y.118, N.121, S.122, H.123
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:E.24, B:R.28
- 2 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)
FMN.3: 25 residues within 4Å:- Chain A: A.66, A.67, G.68, K.71, G.90, S.91, N.116, Y.118, N.152, N.183, K.226, T.254, N.255, T.256, S.276, G.277, L.280, V.304, G.305, G.306, L.326, Y.327, T.328
- Ligands: OG6.4, FJW.13
23 PLIP interactions:23 interactions with chain A- Hydrophobic interactions: A:N.116, A:Y.118, A:Y.327, A:Y.327
- Hydrogen bonds: A:A.67, A:K.71, A:S.91, A:S.91, A:N.152, A:K.226, A:K.226, A:N.255, A:S.276, A:G.277, A:G.306, A:Y.327, A:T.328, A:T.328
- Water bridges: A:A.67, A:G.305, A:V.307, A:V.307, A:V.307
FMN.16: 25 residues within 4Å:- Chain B: A.66, A.67, G.68, K.71, G.90, S.91, N.116, Y.118, N.152, N.183, K.226, T.254, N.255, T.256, S.276, G.277, L.280, V.304, G.305, G.306, L.326, Y.327, T.328
- Ligands: OG6.17, FJW.26
22 PLIP interactions:22 interactions with chain B- Hydrophobic interactions: B:N.116, B:Y.118, B:Y.327, B:Y.327
- Hydrogen bonds: B:A.67, B:K.71, B:S.91, B:S.91, B:N.152, B:K.226, B:K.226, B:N.255, B:G.277, B:G.306, B:Y.327, B:T.328, B:T.328
- Water bridges: B:A.67, B:G.305, B:V.307, B:V.307, B:V.307
- 2 x OG6: 6-[bis(oxidanyl)methyl]-5~{H}-pyrimidine-2,4-dione(Non-covalent)
OG6.4: 13 residues within 4Å:- Chain A: K.71, N.116, R.117, Y.118, G.119, F.120, N.183, S.186, P.187, N.188, N.255, T.256
- Ligands: FMN.3
13 PLIP interactions:13 interactions with chain A- Hydrophobic interactions: A:F.120
- Hydrogen bonds: A:N.116, A:N.116, A:Y.118, A:G.119, A:F.120, A:N.183, A:N.188, A:N.255, A:N.255, A:T.256
- Water bridges: A:S.186
- Salt bridges: A:K.71
OG6.17: 13 residues within 4Å:- Chain B: K.71, N.116, R.117, Y.118, G.119, F.120, N.183, S.186, P.187, N.188, N.255, T.256
- Ligands: FMN.16
12 PLIP interactions:12 interactions with chain B- Hydrophobic interactions: B:F.120
- Hydrogen bonds: B:N.116, B:N.116, B:Y.118, B:G.119, B:F.120, B:N.183, B:N.188, B:N.255, B:N.255
- Water bridges: B:S.186
- Salt bridges: B:K.71
- 6 x ACT: ACETATE ION(Non-functional Binders)
ACT.5: 6 residues within 4Å:- Chain A: Q.139, A.140, T.143, L.176, A.177, D.178
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:D.178
ACT.6: 5 residues within 4Å:- Chain A: P.94, K.95, L.125, S.126, E.168
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:L.125
- Hydrogen bonds: A:E.168
- Water bridges: A:L.125, A:S.126
- Salt bridges: A:K.95
ACT.7: 1 residues within 4Å:- Chain A: R.131
2 PLIP interactions:2 interactions with chain A- Water bridges: A:E.74
- Salt bridges: A:R.131
ACT.18: 6 residues within 4Å:- Chain B: Q.139, A.140, T.143, L.176, A.177, D.178
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:T.143, B:D.178
ACT.19: 5 residues within 4Å:- Chain B: P.94, K.95, L.125, S.126, E.168
5 PLIP interactions:5 interactions with chain B- Hydrophobic interactions: B:L.125
- Hydrogen bonds: B:E.168
- Water bridges: B:L.125, B:S.126
- Salt bridges: B:K.95
ACT.20: 1 residues within 4Å:- Chain B: R.131
1 PLIP interactions:1 interactions with chain B- Salt bridges: B:R.131
- 4 x CL: CHLORIDE ION(Non-functional Binders)
- 2 x FJW: 5-cyclopropyl-2-[1-[(2-fluorophenyl)methyl]pyrazolo[3,4-b]pyridin-3-yl]pyrimidin-4-amine(Non-covalent)
FJW.13: 19 residues within 4Å:- Chain A: M.14, L.17, Q.18, P.23, A.26, H.27, L.29, A.30, F.33, L.39, F.69, V.105, R.107, Y.118, Y.327, L.330, T.331, P.335
- Ligands: FMN.3
13 PLIP interactions:13 interactions with chain A- Hydrophobic interactions: A:H.27, A:L.29, A:A.30, A:F.33, A:L.39, A:F.69, A:F.69, A:V.105, A:L.330, A:T.331
- Hydrogen bonds: A:Q.18, A:Q.18, A:R.107
FJW.26: 19 residues within 4Å:- Chain B: M.14, L.17, Q.18, P.23, A.26, H.27, L.29, A.30, F.33, L.39, F.69, V.105, R.107, Y.118, Y.327, L.330, T.331, P.335
- Ligands: FMN.16
13 PLIP interactions:13 interactions with chain B- Hydrophobic interactions: B:H.27, B:L.29, B:A.30, B:F.33, B:L.39, B:F.69, B:F.69, B:V.105, B:L.330, B:T.331
- Hydrogen bonds: B:Q.18, B:Q.18, B:R.107
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhou, X. et al., Discovery and Optimization of Novel h DHODH Inhibitors for the Treatment of Inflammatory Bowel Disease. J.Med.Chem. (2023)
- Release Date
- 2024-05-29
- Peptides
- Dihydroorotate dehydrogenase (quinone), mitochondrial: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.48 Å
- Oligo State
- homo-dimer
- Ligands
- 6 x SO4: SULFATE ION(Non-functional Binders)
- 4 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)
- 2 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)
- 2 x OG6: 6-[bis(oxidanyl)methyl]-5~{H}-pyrimidine-2,4-dione(Non-covalent)
- 6 x ACT: ACETATE ION(Non-functional Binders)
- 4 x CL: CHLORIDE ION(Non-functional Binders)
- 2 x FJW: 5-cyclopropyl-2-[1-[(2-fluorophenyl)methyl]pyrazolo[3,4-b]pyridin-3-yl]pyrimidin-4-amine(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhou, X. et al., Discovery and Optimization of Novel h DHODH Inhibitors for the Treatment of Inflammatory Bowel Disease. J.Med.Chem. (2023)
- Release Date
- 2024-05-29
- Peptides
- Dihydroorotate dehydrogenase (quinone), mitochondrial: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A